Mycobacterium pseudoshottsii: MPSD_47130
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Entry
MPSD_47130 CDS
T07300
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mpse
Mycobacterium pseudoshottsii
Pathway
mpse03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mpse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MPSD_47130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpse03400
]
MPSD_47130
Enzymes [BR:
mpse01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MPSD_47130
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MPSD_47130
DNA repair and recombination proteins [BR:
mpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MPSD_47130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Ribosomal_S13
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
BBA90031
LinkDB
All DBs
Position
complement(5138842..5139705)
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AA seq
287 aa
AA seq
DB search
MPELPEIEALVDHLRRHAVGTTIGRVDVAALSVLKTFDPPINALHGQTVTGAGRWGKYLG
VQAGPLWLIAHLSRAGWLRWSDKLAAAPLRPGKGPIALRVHLGTPGVAPGFDLTEAGTQK
RLAVWLVEDPRQVPGIATLGPDALELGPEELAGVLGPHTGRIKTVITDQKVIAGIGNAYS
DEILHVAKISPFATAAKLSEEQLAALHDAVVSVLTDAVSRSVGQGAATLKGEKRSGLRVH
ARTGLPCRVCGDTVREVSFADKSFQYCATCQTGGKVLADRRMSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaactcccggagatcgaagcgctggtcgaccacctgcgccggcacgccgtcggg
accaccatcggccgcgtcgatgtggccgcgctgtcggtgctgaaaaccttcgacccgccg
atcaatgccctgcacggccagaccgtgaccggtgcgggccggtggggaaaatacctgggg
gtgcaggcggggccgctgtggttgatcgcgcacctctcgcgggcgggctggttgcgctgg
tcggacaagctggcggcggccccattgcgcccaggcaaaggcccgatcgcgttgcgcgtc
catctcggcacccccggggtggcacccggcttcgatctcaccgaagccgggacccagaag
cgcctggcagtctggctggtcgaggatccgcggcaggtgcccggcatcgccacgctcgga
ccggatgcgctcgaactcgggcccgaggagctggccggcgtcttgggcccccacaccggc
cggatcaagacggtcatcaccgatcagaaggtgatcgcgggcatcggcaacgcctacagc
gacgaaatcctgcacgtcgcgaagatctcgccgttcgccacggccgcaaaactgtccgaa
gaacaacttgccgccttgcacgacgcggtggtttccgttctcaccgacgcggtcagccgt
tccgtcggccagggcgccgccacgctcaaaggggagaagcgttccggcctgcgggtacac
gcgcgcaccggcctgccgtgccgggtgtgcggggacaccgtgcgagaggtttcgttcgcg
gacaagtcatttcaatattgcgcgacctgccagaccggcggcaaagtgctggccgaccgg
cgcatgtcgcggctactcaagtag
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integrated database retrieval system
