Macrococcus psychrotolerans: QA539_02935
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Entry
QA539_02935 CDS
T10921
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mpsh Macrococcus psychrotolerans
Pathway
mpsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QA539_02935 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpsh03019
]
QA539_02935 (rnr)
03016 Transfer RNA biogenesis [BR:
mpsh03016
]
QA539_02935 (rnr)
Enzymes [BR:
mpsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QA539_02935 (rnr)
Messenger RNA biogenesis [BR:
mpsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QA539_02935 (rnr)
Transfer RNA biogenesis [BR:
mpsh03016
]
Prokaryotic type
tRNA degradation factors
QA539_02935 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
Rho_RNA_bind
S1_RRP5
RNase_II_C_S1
Spt6_S1
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
WZE71465
UniProt:
A0AAT9P7V0
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All DBs
Position
569136..571460
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AA seq
774 aa
AA seq
DB search
MHLYEHEVIAYLKSLKGSAVTIEAIEAHLNLESADAFKDLVKTLVHLEQTGKLSRTKNDK
YYIAFDGSKALVKGTLSQHKKGFAFVRAEDETVDDVFIPPNKINRAMDGDTVLVSVSKAR
DGRNEGEVKAIEKRAITQVVGTYTEAKHFGFVLPDDSRITQDIFIPKGKNLGAVEGHKVL
VELTQYADGTNNPEGMVKAILGHKNDPGVDILSIIYQHGINIEFNPATIEEANNVPDEIS
PSEITGRTDLRDVLTITIDGADAKDLDDAISVDKLDNGNYRLIVSIADVSHYVTEGSSLD
ADAYERGTSVYLVDRVIPMIPHRLSNGICSLNPHADRLTLSCEMEITPNGHTVNHKIYES
VIHSDERMTYDDVNAILEDKDEALINKYAHIHELLLHAKDLAAILKRMREARGEIDFDLK
EAKILVDEDGVPREVVIRDRGLGERLIESFMLAANETVAEHFAKMKVPFIYRVHEEPKAD
RLKRFFEFITNFGILVKGGTENIHPKTLQNIGNEIHGKPEELVISTLMLRSMQQAKYSEE
NLGHFGLSAEYYTHFTSPIRRYPDLIVHRLIRKYLFEKSMDDKAQDFWAEALIEISEHTS
KRERRAIDAERDTDDLKKAEYMVQHIGEEFDGIISSVANFGMFVELENTIEGMVHNSNMT
DDYYNFDERHMAMIGERHGKVYRIGQKVRVKVVNVNVDERMIDFAIVGMDMKKIEDKIRE
VKIKAKRNTKSSDEKPQKKGRGKARGTEMSKKHKNKKPFYKAKAVKNSGRRKKK
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgtatgaacatgaagtaattgcatatttaaaatcattaaagggtagtgcagtt
acgatagaagcaatagaagcgcatctaaatcttgagagtgcagatgcatttaaagattta
gttaaaacgcttgtacatttagaacaaacaggaaaattgagtcgcacgaaaaacgataag
tactacattgcatttgatggtagtaaagcactcgtaaaaggaacactgagtcagcataag
aaaggttttgcattcgtaagagcagaggacgaaacagtagatgatgtatttattccaccg
aataagattaatcgtgctatggatggagatacggtactcgtgagcgtatcaaaggcgcga
gatggtcgtaatgaaggtgaagtaaaggcaattgaaaagcgtgcaattactcaagttgtc
ggtacttatactgaagcgaaacatttcggttttgtattacccgacgactcaagaattaca
caagatatctttattccaaaaggtaaaaatttaggggcagttgaaggtcataaagtactc
gtagaacttacgcagtatgctgatggtacgaataatcctgaaggtatggtaaaagccatt
cttggtcataaaaatgatccaggcgttgatatattatcgataatttatcaacacgggatt
aatattgaattcaatccagcgacgattgaagaagctaataatgtaccagatgaaatcagt
ccctcagaaatcacaggaagaacggatttacgtgacgttctgacgattacaattgatgga
gccgatgcaaaagacttagatgatgcaatcagcgttgataagctggataatgggaactac
cgtttaatcgtctctattgctgatgtcagccactatgtaacagaaggatctagtcttgat
gcagatgcatatgaacgtggcacaagtgtgtatctagtggaccgcgtaattccgatgata
ccacatcgactcagcaatggtatttgttcacttaatccacacgcagaccgtttaacatta
agctgtgagatggaaatcacaccaaatggacatactgtaaatcataaaatctatgaaagt
gtgatacattcggacgaacgtatgacttatgatgacgtgaatgcaatattagaggataag
gatgaagctttaatcaataaatatgcacatattcatgaactactattacacgccaaagat
ttagcagcgattcttaaacgtatgcgcgaagcacgtggagagattgatttcgatttaaaa
gaagcaaagatattagtagatgaagacggcgttcctagagaagtagtgataagagataga
gggctcggtgagcgcttgattgaatcctttatgcttgcagcaaatgaaacagttgcagaa
cactttgcaaagatgaaagtaccgttcatctatcgcgtacatgaagaaccgaaagcggat
cgcctgaaacgtttctttgagtttattacaaacttcggtatattagttaagggtggcaca
gagaatattcatccgaaaacgttgcagaatatcggtaacgaaattcatggtaaacctgaa
gaactcgttatctcgacacttatgctgcgctcgatgcaacaggcgaagtattcagaagaa
aacttaggtcattttggattatcagctgaatattatacgcacttcacatccccgatacga
cgttatccagatttaatcgtgcacagactgattcgtaaatatttgttcgagaaatctatg
gacgataaagcacaggatttctgggcagaagcattgatcgagattagtgaacatacttct
aaacgagaacgccgtgccatcgatgccgaacgtgatacagatgatctgaagaaggcagaa
tacatggtgcagcatatcggtgaagaatttgacgggattatcagcagtgttgcaaacttc
ggtatgttcgttgaacttgagaatacaatcgaaggtatggttcataattcaaacatgaca
gacgattactataactttgatgaacgtcatatggcgatgattggtgaacgtcacggtaaa
gtatacagaatcggtcagaaagtgcgcgtaaaagttgtgaatgtcaacgttgatgaacgc
atgattgactttgcgattgttggtatggatatgaagaagattgaagataagattcgcgaa
gtgaaaattaaagcgaaaaggaacacaaaatcatctgatgaaaaaccgcaaaaaaaagga
cgcggtaaagcgcgtggcacagaaatgagtaagaagcataaaaataagaaaccgttctat
aaagcgaaagcggtgaaaaattcaggacgtagaaagaagaagtag
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