Macrococcus psychrotolerans: QA539_08520
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Entry
QA539_08520 CDS
T10921
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mpsh Macrococcus psychrotolerans
Brite
KEGG Orthology (KO) [BR:
mpsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mpsh03009
]
QA539_08520 (rlmD)
Enzymes [BR:
mpsh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QA539_08520 (rlmD)
Ribosome biogenesis [BR:
mpsh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QA539_08520 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Methyltransf_25
Cons_hypoth95
MTS
HMA
MethyltransfD12
PrmA
DIT1_PvcA
TehB
DUF929
Methyltransf_12
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
WZE70528
UniProt:
A0AAU6RK93
LinkDB
All DBs
Position
complement(1644737..1646116)
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AA seq
459 aa
AA seq
DB search
MTDIQVKVGQQFPLTIKRLGINGEGIGYFKRKITFVKGALPGEVIVAQVTDINPKYLQAK
MVKIREKSNERVKPKCNVFDLCGGCQLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIK
DVKGMHNPYTYRNKNQFPVEKTGRKVRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEVKK
IMSELNIDACKNPMREKGVRHIVTRVALATGEIQVVFVTNTRHLKKQDLLAERVMRLAGV
KSVALNINTEKTSIVMGDETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEV
RDAAALTGKEHVVDAFCGTGTIGIWLADNAGEVRGIDTNEDGIVNAIYNATLNGADNCKF
EVGDASEKLNEWIEEGFYPDVITVDPPRTGLSEETIKLINEIKPKTFVYTSCNPSTLAKD
LAHLTKAFQVEYIQPVDMFPQTAQVEAVVKLTRKRKLGK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgacagatatacaagtaaaagtcggtcagcagtttcctttaacaattaagagactcggt
atcaacggagaaggtattggttattttaaacgcaagattacttttgtaaaaggggcattg
cctggagaagtcatcgtcgcacaagtaacagatattaacccgaaatacttgcaggcaaag
atggttaagattcgtgaaaaatcaaatgaacgtgtaaaaccgaaatgtaatgtattcgat
ttatgtggagggtgtcaactacagcatctttcttatcgtggacagttaaagtataagaaa
caaattgttgaagatgcgctgacaaaatatgcaccgcacgtgaagctcgacaaaattaaa
gatgttaaaggtatgcataatccttatacgtatagaaacaaaaatcaattccctgtagaa
aagaccggacgtaaagtgcgtgcggggttatataaagagcattctaatacgttaattgat
ctgcatgaatgtatcgtgcaggataaccgtacaatgcatacgacgaatgaagtgaagaag
attatgagcgagcttaatatcgatgcttgtaagaatccgatgcgcgaaaaaggtgtgcgc
catatcgttacccgtgtggcacttgcaacaggtgaaattcaagttgtgttcgtcacaaat
acaagacacctaaaaaaacaagatctattagcagaacgtgtgatgcgtctagctggcgtg
aaaagtgttgcattaaacattaacacggagaaaacatctattgttatgggtgatgaaaca
atcgttatcgcgggtgaggaaacaattcgtgaacaactacaagatcatatttatgactta
tcagcggaaagcttcttccagcttaatccgagacagactgttgtactttataatgaagta
cgcgatgcagcagcacttacaggtaaggagcatgtagtagacgcattctgtggaacaggt
acgattggtatatggctagcggataatgcaggtgaagtacgcggtatagatacgaatgaa
gatggtatcgtgaatgcaatatataatgctacattaaatggtgcagataactgtaagttt
gaagttggcgatgcatcagagaaattaaatgaatggattgaagaaggcttctatccagat
gtaataacagtggatccaccaagaacaggattatctgaagaaacgattaaattaatcaat
gaaatcaaaccgaagacattcgtctatacgagctgtaatccttcgacattggcgaaagac
ttagcgcatttaacgaaagcatttcaggtggagtatattcagccagtagatatgttcccc
caaacagcgcaagtggaagcggtagtgaagcttacacgtaaaagaaaactagggaaataa
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