Macrococcus psychrotolerans: QA539_10315
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Entry
QA539_10315 CDS
T10921
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpsh Macrococcus psychrotolerans
Pathway
mpsh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QA539_10315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpsh03400
]
QA539_10315 (mfd)
Enzymes [BR:
mpsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QA539_10315 (mfd)
DNA repair and recombination proteins [BR:
mpsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QA539_10315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Glyco_hydro_115
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WZE70851
UniProt:
A0AAU6REW7
LinkDB
All DBs
Position
complement(1965060..1968560)
Genome browser
AA seq
1166 aa
AA seq
DB search
MKQIIDKLIYKDERFQDYNNAIGNKNILITGLNPSAKAMMLAESYMHHQKQMVVVTSNLY
QAERLERDLVQLVNEEDVFKFPVQDIMIEEFSTKSPDLMQERIRTLTHLAKGQNGLFLIP
VNGLEKLISQKETFLKYHLEITLGIDIDLVELQQRLIDMGYQKTERVTTLGEFSVRGGLI
DIYPMIGEPVRIELFDTEVDSIRAFDIDSQRSLHNIDKVELSTASEFIFSAEDLKLMSDN
LSEAFENTRTKIKTNVRDDLRETYETVKLNMTELFSHNILRRMVKFAYREETTIADYFKE
DAIIVIDEYNRVIEAKDAAIRENSEFMESLIESGRGFIGQTFIKEGSLEALTNKHKVAYF
TLFTASMTAVIDEVFKFSCKPVQQFYGQYDLMFSEFDRYRKNDFNIVVLATNDTRKEKIK
SMLTDMNLPVTFNIDESKPGISTIVQGDLSEGLELPYMKLVVITERELFKLRKEKPKRTQ
KKLSNAEKIKSYQELNIGDYVVHTHHGVGRYLGVETLLVNKLHKDYIKIQYKGTDQLFVP
VDQMSQVQKFVGSEDKDPKLNKLGGTEWKKTKARVQKNVEDIAEELLKLYQERERIEGYQ
FGPDTEEQENFEMDFPYEPTHDQKQSLIEIKGDMEKSKPMDRLLCGDVGYGKTEVAIRAA
FKAVMDGKQVAFLVPTTILAQQHYETIIERMQDYPVEVQMMSRFRTTKEVNETKKGLKSG
FVDIVVGTHKLLGKDIVYKDLGLLIVDEEQRFGVTHKEKIKALKTNVDVLTLTATPIPRT
LHMSLLGVRDLSVIETPPENRFPVQTYVLEYQHNFIKEAMERELSRNGQVFYLYNRVATI
YQKAEQLEMMMPDARIAVAHGQMSERELEETMLGFINGEYDILVTTTIIETGVDVPNANT
LIIEDADRFGLSQLYQLRGRVGRSNRISYAYFLHAPNKVLTEVAEQRLQAIKEFTELGSG
FKIAMRDLNIRGAGNLLGKQQHGFIDSVGYDLYSEMLQQAVNEKRGIKEEEAVPQLEIDV
EIDAYIPAEYIREEQAKIEFYKKLRSVTTEQELIDVQDEMTDRYGEYPEAVDHLMKIVEI
KVNALSFGIVQVRDTGKSIELEASEATTTKVNGERLFKATESFGRDLKIEYKDNKLTFIL
KKQSNWLSALVQLSHRIQEGIMMDGE
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaataatagataaactcatatataaagatgagcgatttcaagattataacaat
gcaatcggtaataaaaatatactaatcactggattaaacccatctgcaaaagcaatgatg
ctcgctgaaagttatatgcatcatcaaaaacagatggttgttgttacaagcaacctttat
caggctgaaaggttagaaagagatctcgtacagctcgtcaatgaagaagatgtcttcaaa
tttcctgtacaagatatcatgattgaagaattctctacaaagagtccggaccttatgcaa
gagcgtataagaaccctcacccatttggcaaaaggccaaaatgggctatttctcattccg
gtgaatgggcttgagaaattaattagtcaaaaagaaacattcctaaaatatcatttagaa
attacgttaggtattgatatagacttagtggaattgcagcaacgactcattgatatggga
tatcaaaagacagaacgtgtaacaacattaggagaattttccgttcgtggaggactcatt
gacatatacccaatgattggtgaacctgtacgtatcgaactatttgacaccgaagtagac
tcgattcgtgcatttgatattgatagtcaacgttcgttgcataatatagataaggtggag
ttatcgactgcaagtgaatttattttttctgctgaagatttaaagttgatgtcagataat
ctcagcgaagcatttgagaacacacgtacgaagattaagacgaatgtccgagatgattta
agagaaacttatgaaacggtaaaacttaatatgacggagttgtttagtcataatattctg
cgtcgcatggttaaatttgcctatcgtgaagagacgacaattgcagattattttaaagag
gatgccatcattgtgattgatgaatataatcgtgtgatagaggctaaagatgcggcgatt
cgagaaaacagcgaatttatggaatcactgatcgaatctggtcgtggatttattggtcag
acgtttatcaaagaaggtagtttagaagcacttacgaataaacataaagttgcgtacttc
actttatttactgcaagtatgactgcagtgatcgatgaggtttttaagttttcatgtaaa
cctgtgcaacaattttatggtcaatatgacttaatgttctcagagtttgatcgttatcgt
aagaatgactttaatatagtggtgttagcaacaaatgatacgcgaaaagaaaagattaag
tcgatgctcactgatatgaatcttccagtaacatttaatatcgatgaaagcaagcctggt
atatctacaattgtacaaggggatctttcagaagggctcgaacttccttatatgaaacta
gttgttataacggagcgagaactgtttaagttacgtaaagaaaaaccaaaacgtactcaa
aaaaaattatcaaatgctgagaaaataaaatcgtatcaagaactaaatataggtgattat
gttgttcatacacatcacggtgttggccgttatcttggtgtagagacattgctcgttaat
aaactgcataaagactatattaagattcaatataaaggtacggatcaactgtttgtccct
gttgatcagatgagccaagtacaaaaattcgttggttcagaagataaggatccaaagctc
aataaacttggcggaacagagtggaaaaaaacgaaagcgcgtgttcaaaagaacgttgag
gatattgcggaagaattattaaagctctaccaagaacgcgaacgcatagaagggtatcaa
tttggtccggatactgaagaacaagaaaactttgaaatggactttccgtatgaaccgacg
catgatcaaaagcaaagtcttatcgaaattaaaggtgatatggaaaaaagtaagccgatg
gatcgtctgttatgtggagatgttggatacggtaaaacggaagttgcaattcgcgcggca
tttaaagctgttatggatgggaaacaagttgcgttcttggtacctacaacaatcttagcc
caacaacattatgaaacaattattgagcgtatgcaggattatccggtagaagtgcagatg
atgagtcgttttagaacgacgaaagaagttaatgaaacaaagaaaggactcaaatcaggg
tttgtagatatcgttgtcggaacacataaattactcgggaaagatatcgtatacaaagat
ctgggattgctgattgtagatgaagagcaacgtttcggcgtgacgcataaagaaaagatt
aaagcattaaagacgaatgtagatgtattaactctaacagcgacaccaattccaagaaca
ttgcatatgagtttgttaggtgtacgagatttatcggtgattgagacgccgccagaaaat
agattcccagtgcagacttacgtacttgagtaccagcataacttcataaaagaagcgatg
gaaagagaattatcaaggaatggacaagtgttttacctttataatcgcgttgctaccatt
tatcaaaaggcagaacagctcgagatgatgatgcctgatgcgaggattgcggtagcacat
ggacaaatgtctgaaagagaattggaagaaacgatgctcggctttattaatggcgaatat
gatattcttgttacaactacgattatcgaaacaggggtggatgtgccgaatgcaaataca
ttgataattgaagatgcagatcgtttcggattaagtcagctgtaccaactgcgcggacgt
gttggtcgtagtaatagaattagttatgcatacttccttcatgcgccgaataaagtactc
actgaagttgcagagcaaagactacaagcgattaaggaatttactgaacttggttcaggt
tttaaaattgcgatgcgtgatctaaatattcgtggtgcagggaatctactaggaaaacaa
cagcacggattcattgattcagtgggatatgacctgtattcagaaatgctacagcaagca
gtgaatgaaaaacgggggattaaagaggaagaagcggtgccacaattagagattgatgta
gaaatagatgcatatattccggcagaatatataagagaagaacaggcaaagattgaattt
tataagaaattacgtagtgttacgacagagcaggaactgatcgatgtccaagacgaaatg
accgatcgttacggggaatatccagaagccgtagatcacctcatgaaaattgttgaaatt
aaagtaaatgcattaagcttcggtattgtacaagtgagagacacaggaaaatcgattgaa
ctggaagcttcagaagcaacaacgactaaagttaatggtgagcgtttatttaaagcgaca
gaatcttttggcagagatttgaagattgaatataaagataataaactgacatttatatta
aagaaacaatcaaattggttatctgcacttgtgcagctatctcatcgaattcaggaagga
attatgatggatggagaataa
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