Methylovulum psychrotolerans: CEK71_01290
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Entry
CEK71_01290 CDS
T04929
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mpsy
Methylovulum psychrotolerans
Brite
KEGG Orthology (KO) [BR:
mpsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpsy03016
]
CEK71_01290
Enzymes [BR:
mpsy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CEK71_01290
Transfer RNA biogenesis [BR:
mpsy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CEK71_01290
Prokaryotic type
tRNA splicing ligases
CEK71_01290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF5487
Motif
Other DBs
NCBI-ProteinID:
ASF44806
UniProt:
A0A1Z4BU06
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All DBs
Position
301985..303214
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AA seq
409 aa
AA seq
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MSQPNYEVTHVSGGVPIKTWTRGVPFEEQAREQLINISRLPFIHKWIAAMPDVHLGKGAT
VGSVVPTLNAIIPAAVGVDIGCGMMAVKTEIRAEQLPDSLRDVRHAIERAVPHGRDMHPG
RRDKGSWHDLPEEIAQVWNLQLAEPFSQLCEKHKVLKNTNNAKHLGTLGTGNHFIEVCLD
ESDAVWVMLHSGSRGVGNRIGTHFIELAQKEMQRWFIQLPDRDLAYLPEGSEYFADYVQA
VEWAQRYAQLNRDMMMQRVLSTLSLSLGLNFNAQVAAVNCHHNYVSREHHYGKDVLLTRK
GAVRAGLGEWGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTAAIKNVSVAEHVA
ATEGVECRKDKSVIDETPSAYKPIEQVMAAQSDLVEIMHTLKQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacccaactatgaagtgacccacgtcagcggcggtgtaccgatcaaaacttgg
acacgcggcgtaccctttgaagagcaggcccgtgagcaattgattaacatctcgcgcttg
ccgtttattcataaatggatagccgcgatgcctgacgtgcatttaggtaagggggcgacg
gtcggcagtgtcgtgccgaccttaaacgcgattattccagcggcagtgggggtggatata
ggttgcggcatgatggcggtaaaaaccgaaatccgcgccgagcaattgccggattcgtta
cgcgatgtccgccatgccattgaacgcgccgtaccgcacgggcgggatatgcatccgggt
cgccgtgataaggggtcttggcatgacttgcccgaagagattgcccaggtgtggaattta
caactggcggagccgtttagccagttgtgcgaaaaacataaggtgctaaagaacaccaat
aatgccaaacatctgggcactttaggcacaggtaaccattttatcgaagtgtgcttggat
gaaagcgatgcggtctgggtgatgctgcacagcggctcacgcggggtcggcaaccgtatc
ggcacgcattttatcgaactggcacaaaaagaaatgcagcgctggtttatccaattgcct
gaccgtgatctggcctatttgccggaaggctccgagtattttgccgattatgtccaagcg
gtggaatgggcgcaacgctatgcccaactgaaccgcgatatgatgatgcaacgggtctta
agcactttgtcactgagcttggggctgaatttcaatgcccaagtggcggcggtcaactgt
caccataattatgtcagccgtgagcaccactacggcaaagacgtgctgctgacccgcaaa
ggtgcggtgcgggccgggctgggggaatgggggattattcccggcagtatgggggcgaaa
tcattcatcgtccgtggtttgggtaacgaagaaagtttttgcagttgcagccacggtgcc
gggcgggtgatgtccagaaccgccgccataaaaaatgtctcggtggcagaacatgtcgcc
gctacggaaggcgtggaatgccgtaaggacaagtcggtcatcgacgaaaccccgtccgcc
tataaacctatagagcaagtgatggcggcgcaaagcgatttggtggaaattatgcacaca
ttaaaacaggtggtttgtgtcaaaggttag
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