Methylovulum psychrotolerans: CEK71_15390
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Entry
CEK71_15390 CDS
T04929
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpsy
Methylovulum psychrotolerans
Pathway
mpsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEK71_15390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpsy03400
]
CEK71_15390
Enzymes [BR:
mpsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEK71_15390
DNA repair and recombination proteins [BR:
mpsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CEK71_15390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AAA_22
PpnN_C
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ASF47336
UniProt:
A0A1Z4C1C0
LinkDB
All DBs
Position
complement(3370281..3373736)
Genome browser
AA seq
1151 aa
AA seq
DB search
MAHSLIFSPAIPQTPAQTLVWSGLTGCADALALATAIAKEQRLFVIITPDNQTALRLEHE
LAFFLNKQYSILHFPDWETLPYDVFSPLPEITSERLKVLALLPEVKRGALVVPITTLMHR
LAPREHVLANSFAIRVGDDFNLELNRVKLESVGYQCVSQVYQHAEFAVRGAIVDLFPMGS
SVPFRIELFDETVESIRTFDPESQRSLEKINQIQLFPAREFPFTDAAIKQFRQTFREVFP
QTSLKNTLYADVSKGVAFNGIEYYLPLFVSQTATLFDYLPSSAVLVVSDQFTAHSVAFYS
DAQERYEQRKYDLERPLLTPERLFLSADELADKANRFARIVLDSCPTDGPCQTLPDLTFN
TKLDQPAQRLQQFIAGFNGKVLLVAESAGRREALLDRLRACQISSKRVESWQQFLDTDAP
VCMVVAPVEQSLWLLNPALAIITEPLLSGEKVQQQRRRRKSAARELEAIVNNLNELSIGS
PVVHQEHGVGRYLGLQTLAVGGIPAEFLMLEYANNDKLYVPVSTLHVIGRYTGMSPDTAP
LHKLGGDQWGKTKKKAIEKIRDVAAELLEIHAQRAIKQGHAFAITNTDYQTFADAFPFEE
TPDQRTAIEAILDDMTSPQPMDRVICGDVGFGKTEVSMRAAFIAVQSGKQVAVLVPTTLL
AQQHYQNFCDRFADWPVRIEVMSRFASAKQLKDIAEALAKGLVDIVIGTHTLLSKELKYK
ALGLVVIDEEHRFGVRQKEHFKKLRNELDMLTLTATPIPRTLNMALSGLRDISIIASPPP
NRHAIKTFISTWVDAQIKEACLREIRRGGQVFFLHNDVKSMDKMARELEALLPEARIQIA
HGQMPERDLERIMLDFYHQRFNLLLSTTIIESGIDIPSANTIIINRADKLGLAQLHQLRG
RVGRSHHRAYAYFIVPPKNLMSKDAQKRLEAVEASGDLGAGFMLSSHDMEIRGAGELLGD
DQSGQIQEIGFTLYTELLQRAVDALKSGKQPELDTPMDKGPEVDLQAAALIPEDYLPDIH
ARLVLYKRISSADSTEDLRDLQIEMIDRFGLLPEAVKTLFSVTELKQQAEQLGIKKIEAG
ATGGRIVFSSTPTINAEQLITLIQTQAQVYKLDGMDKLKFTQTFADVAQKVEFIGALLQR
LTLPKPAAKSA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggcacattctttaatcttttctccagcaatcccgcaaacgcctgcacaaaccctcgtc
tggtcgggtttgacggggtgtgccgatgccttggcattggcgacggcgattgccaaagag
caacgcctgttcgtgattatcacccccgataaccaaacggccttacgcttagaacatgag
ctggcgtttttcctgaacaaacagtactcgatcctgcatttccccgattgggagaccttg
ccttacgatgtgttttcgcccctgccggaaatcacctccgaacgcctgaaagttttggcg
ctgttgccggaagtcaaacgcggggctttagtcgtaccgatcaccacgctgatgcaccgc
ctcgccccgcgcgagcatgtcctggcgaacagtttcgccattcgggtcggcgacgatttt
aatctggaacttaaccgcgtcaagctggaaagcgtcggctaccaatgcgtgtcgcaagtc
taccaacatgccgaatttgccgtgcgcggggcgattgtcgacctgttcccgatgggcagt
tccgtaccgttccgcattgaattgtttgatgaaaccgtcgaatccatccgcaccttcgac
cccgaaagccaacgctctttagaaaaaatcaaccagatacaactgtttccggcccgcgag
tttccgtttaccgatgccgccatcaaacagttccggcaaaccttccgggaggtgtttccg
caaacctcgctgaaaaacaccctttatgccgatgtcagcaaaggcgtagcctttaacggt
atcgaatactatctgccgctgttcgtcagccaaactgccactctgttcgattacctgcca
agctcggcggtgttggtggtcagcgaccagttcaccgcccattcggtggcgttttacagc
gatgcccaagagcgttacgagcaacgcaaatacgatttggaacgcccgctgttaacgccc
gaacgcctgttcttatctgccgacgagctcgccgacaaggctaaccgctttgcgcggata
gtcttagacagctgcccgaccgacggcccttgccaaaccctgccggatttgaccttcaac
accaagctcgaccagcctgcgcaacgcttgcagcagtttatcgcgggctttaacggcaaa
gtgctgttggtcgccgaatccgccggacgcagggaagccctgttagacaggctacgcgcc
tgccaaatcagcagtaaacgggtcgaatcttggcaacagtttttggataccgacgcgcca
gtctgcatggtggtcgcccccgtcgaacagagcctatggttgcttaaccccgccctggcc
atcatcaccgaaccgctgctgtccggcgaaaaagtccaacagcaacgccgccgccggaaa
tcggccgcgcgggagctggaagccattgtcaacaacctgaacgaactcagcatcggctcg
cccgttgtccatcaggaacatggcgtaggccgctacctcggcttgcaaaccttggcggtc
ggcggtattcccgccgaatttttgatgctggaatacgccaataacgataagctctatgtt
cccgtgtctaccctgcacgtcataggccgctacactggcatgagcccggacaccgcgccg
ctgcataaattgggcggcgaccaatggggcaaaaccaagaaaaaagccatcgaaaaaatc
cgcgatgtcgccgccgaattgttggaaatccatgcccaacgcgccatcaaacaaggccat
gccttcgccattaccaacaccgactaccagacctttgccgacgcgttcccgtttgaggaa
acccccgaccagcgcaccgccatcgaagcgatactggacgatatgaccagcccgcaaccg
atggatagggtcatttgcggcgatgtcgggttcggcaaaaccgaagtgtcgatgcgggcg
gcctttatcgccgtgcaaagcggcaaacaagtcgcggtactggtaccgaccacgctattg
gcgcaacagcattaccaaaacttctgcgaccgcttcgcagactggccggtgcgcatcgaa
gtcatgtcccgcttcgcctccgccaaacagcttaaagacattgccgaagccttggcgaaa
ggcctggtcgatattgtcatcggcacccacaccctattatccaaagaattaaaatataaa
gccttagggctagtggtgattgacgaagaacaccgcttcggggtacggcaaaaagaacat
tttaaaaagctgcgcaacgaattggacatgctgaccctgaccgccacgccgattccgcgc
accttaaacatggccttatcggggctacgcgacatttccattatcgccagcccaccgccc
aaccgccacgccatcaaaaccttcatcagcacctgggtggacgcacagattaaagaagcc
tgtttacgcgaaatccgccggggcgggcaggtattcttcctccataacgatgtcaaatcc
atggataaaatggcccgcgaactggaagccctgttgccggaagcacgtatccaaatcgcc
cacggacaaatgcccgaacgtgatctggaacgcatcatgctggatttttaccaccaacgc
tttaacctgctgctcagcaccactattatcgaaagcggcatcgacatccccagcgccaac
accatcatcatcaaccgtgcagataaactgggtctggcgcaactgcaccaactgaggggc
cgggtcggacgttcgcaccaccgcgcctacgcctactttatcgtgccgccgaaaaacctg
atgagcaaagacgcgcaaaaacgcctggaagcggttgaagcctccggcgacttgggcgcg
ggctttatgctgtcctcacatgatatggaaatccggggcgctggggaattgctcggcgac
gaccaaagcgggcaaatccaagaaatcggctttaccttatacaccgaattgttgcaacgc
gccgtggacgcgctcaaatccggcaaacaaccggaattagacaccccgatggacaaaggc
cccgaagtggatttgcaagccgccgcgctcatccccgaagactacctgcccgacatccac
gcccgcctagtgctatacaaacgcatctccagtgccgacagcaccgaagacttgcgggac
ttgcaaatcgaaatgatcgaccgcttcggcttgctgccggaagccgttaaaaccctattc
agcgtcaccgaactgaaacaacaggcggaacaattgggcattaagaaaattgaagcgggt
gccacaggcgggcgcatcgtctttagcagcaccccgaccattaacgccgagcaattgatc
accttaatccaaacccaagcccaagtgtacaaactcgacggcatggacaaattaaagttt
acccaaacgtttgccgatgtcgcccaaaaagtggaatttatcggcgctttgctgcaacgc
ttgaccttgcctaagcctgcggcaaaatcagcctag
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