Methylovulum psychrotolerans: CEK71_20160
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Entry
CEK71_20160 CDS
T04929
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mpsy
Methylovulum psychrotolerans
Brite
KEGG Orthology (KO) [BR:
mpsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpsy03019
]
CEK71_20160 (hrpA)
Enzymes [BR:
mpsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CEK71_20160 (hrpA)
Messenger RNA biogenesis [BR:
mpsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CEK71_20160 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
ResIII
AAA_23
nSTAND_NTPase5
AAA_25
NACHT
AAA_30
SLFN-g3_helicase
PhoH
Phage_tail_terminator_8
FtsK_SpoIIIE
SRP54
Motif
Other DBs
NCBI-ProteinID:
ASF48188
UniProt:
A0A1Z4C3V8
LinkDB
All DBs
Position
complement(4471713..4475642)
Genome browser
AA seq
1309 aa
AA seq
DB search
MSSNELIQQLTRQLPLCLNQDRHALKRQLDRFRQDAKKGKLIDGALAALAGRIDNSVALR
NRRLASIPPLNFPDLPVTGKKDEIAELIKNHQVVVVCGETGSGKTTQLPKICLSIGRGAA
GFIGHTQPRRIAARTVADRIAEELGETIGKSVGYKIRFNDKTHAESLVKLMTDGILLAES
QNDPYLNQYDTIIIDEAHERSLNIDFLIGYMKWLLPKRPDLKLVITSATIDTKRFSEHFD
NAPIIEVSGRTYPVDIRYRPIEQKDEDEENDETTDDLQNAILDAVDELTRDLRGDILIFL
SGEREIRETTDSLKKHHPTQYEILPLYSKLSVSEQERVFNPKGGKLRIVLATNVAETSLT
VPGIRGVIDTGHARISRYSHRSKIQRLPIERVSQSSANQRAGRCGRVAEGICIRLYSRED
YIARPEFTEPEIMRTNLSAVILQMAALKLGDIEDFPFIEPPDDKMIRDGKTMLQEVNALD
KAGQLTDVGRQLAKFPTDPKLARMLVAAHDEGCLHEVAIIVAALSVQDPREKPADKMGQA
DAKHAAFRHPESDFLTLLNVWNTYEEQKKHLSNSKLRKYCSDNFLSYMRMREWFDIHAQI
LQAVKGDLKMHLNAPAVTLAAADAPPLPYENIHRALLTGLLSNIGFRHEQYEYLGARGLK
FFIFPGSGVHKLKPKWIMAAEQVETSKVYARTVARIEPEWIEHCAGHLVKHNYYDPHWEK
KAGRSAVYERTLLYGLTLQAGRKIPYERVDAKSARELFIQSALVSHEYHSNAPFYVANQK
LLEEVGMIQHKGRRVDLVEDELWLYGFYDAKLPAEVVNGITLDQWRKTVEKTNPKFLFLT
KEDLTREKEGYVNEWDYPDSKKIGNLTIPLQYRFEPGHDEDGVTAVIPVHQLNQLSAVPF
DWLVPGLLEEKCIALIKALPKNLRKHFVPVPETVKRCLEIEPDFKGLLQEWLSYRLRKLT
GEAVPLNAWALDGVAEHLKMNFRVIDDQGKLLDYGRDLKKLQQKHAIQAVQSFDQIAADE
LSYTGCIQWAFDDLPDTYAFIQQGQNFIGFPAIVDEGDAVGVRIFDTEQKAAAEHQAGLL
RLFQLSLRKECAYLGKNNLQAAAAELAYHRLAAHPIIKHAVTASYKEDMLKLILQHVFMD
GRIIRTQQAFEHSLQQNKPGLMLVANDAGKLALEVMALYTAVKAQLQRLNANDPLAIDVN
GQLAVLVYAGFLRTTPYEQLKAVPRYLKAISYRLEKLDNNPQKVQELNRYVLRYWKDVEK
KAPKNTIVPEQEAFRWMLEEFRVSLFAQHLKTAYPISAKRLDKAWDERG
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaacgaacttatccaacaactcacccgccagttacctctgtgtctgaaccaa
gaccgccatgcgctgaaacggcagttagaccgtttccgtcaggatgccaagaaaggcaag
ctgatagacggggctttggcggcgctggctggccgtatcgataactcggtggcgttgcgt
aaccgccgccttgccagtatcccgccgctaaatttccccgatttgcctgttacgggtaag
aaggatgagattgccgagctgattaaaaaccatcaggtggtggtggtgtgcggggaaacg
gggtcgggtaagaccacgcagttacctaaaatctgtttgtcgattggccggggtgcggcc
gggtttattggccatacccagccgcgccggattgcggcgcggacggtggcggatcggatt
gccgaggaattgggcgagacgattggcaagtcggtgggctataaaatccgttttaatgac
aaaacccatgccgaatccttggttaagctgatgacggacgggattttgctggcggagtcg
caaaatgacccgtatctgaaccagtacgacactattattattgacgaggcgcatgagcgc
agtctgaatattgattttttgatcggctatatgaagtggctgttgccgaaacgcccggat
ttaaagctggtcattacgtcggcgacgattgataccaaacggttttccgagcattttgac
aatgcgccgattattgaggtgtcggggcggacgtatccggtggatatccgttatcgccct
attgagcaaaaggacgaggacgaggaaaacgatgagaccactgatgatttgcagaatgcg
attctcgatgcggtcgatgaactgacccgcgatttgcgcggcgatattctgattttttta
agcggtgagcgggaaattagggaaaccacggattcgttaaaaaagcatcatcccacccag
tatgagattttgccgctgtattctaagctgagcgtcagtgagcaggagcgggtgtttaac
cctaagggtggcaagttgcgcattgttttggcgactaacgttgcggaaacctcgttgacg
gtgccgggcatacgcggggtgattgataccggacatgcgcggattagccgctatagccac
cgcagtaaaatccagcgtttgccgattgagcgggtgtcgcaatccagcgctaaccaacgc
gccggacggtgcgggcgggtcgcggaagggatttgtatccgtctgtattcgcgcgaggac
tatattgccaggccggagtttaccgagccggagatcatgcgcactaatttgtcggcggtc
attttgcagatggcggcgttgaaattgggtgatattgaggattttccgtttatcgagccg
cctgatgacaaaatgatccgtgacggcaagaccatgctgcaagaggtcaatgccttggat
aaagcggggcagttgactgatgtcgggcggcagttggcgaagtttccgactgaccctaag
ttggcgcggatgttggtggcggcccatgatgagggctgtctgcatgaggtggcgattatt
gtcgcggccttaagtgtgcaagacccgcgcgagaagcctgctgataagatggggcaggcg
gatgccaaacatgcggcgttccggcatcccgaatcggattttttgacgttgctgaatgtc
tggaacacttacgaggaacagaaaaagcatttgtcgaacagcaaattgcgtaaatattgt
tcggataattttttgtcttatatgcggatgcgcgagtggtttgatattcacgcgcaaatt
ttgcaggcggtgaagggggatttaaaaatgcacctgaatgcccccgccgttacgctggcg
gcggcagatgcgccgccgttgccttatgagaatatccaccgcgcgttattgacggggctg
ttgtcgaatatcggtttccgccatgagcaatacgagtatttgggcgcgcggggcctaaag
tttttcattttccctgggtctggggtgcataagctgaaaccgaagtggattatggcggcg
gagcaggtcgagaccagtaaggtgtatgcgcggacggtggcgcggattgaaccggaatgg
atagagcattgcgcggggcatttggttaagcataattattatgacccgcattgggagaaa
aaagccggacgcagtgcggtgtatgagcgcaccttgttatatggcctgaccttgcaggcg
gggcggaaaatcccttatgagcgggtggatgcaaaatcggcgcgggagctgtttatccaa
tcggcgttggtcagccatgagtaccacagcaacgcgccgttttatgtcgcaaaccaaaag
ttgctggaagaagtcggcatgatccagcataaggggcggcgtgtcgatttggtcgaagat
gagctgtggttatatggtttttatgatgctaagttgcctgctgaggtggtcaatggcatc
actttagaccagtggcgcaagacggttgaaaaaaccaatccgaagttcctgtttttgact
aaggaagatttgacccgcgagaaagagggctatgttaacgagtgggattatcctgatagc
aagaaaatcggtaatctgaccattccgctgcaataccgttttgagccgggtcatgatgag
gacggggtgacggcggtgattcctgtgcatcagttaaaccaattgtcggctgtgccgttt
gactggttggtaccgggtttgttggaagaaaaatgtatcgctttgattaaagccttgccg
aaaaacttgcgcaagcactttgtccccgtaccggaaaccgtcaaacgctgtttggaaatc
gagccggattttaaggggttgttgcaagaatggctgagttaccgtttgcgcaagttgacg
ggtgaggctgtgccgttaaatgcctgggcgttggatggggttgccgaacacttgaaaatg
aatttccgggtgattgatgaccaaggcaagctgttggattatggccgcgatttgaaaaaa
ttgcagcaaaaacacgctatccaggcggtgcaaagctttgatcagattgccgctgatgag
ttgagttacacgggctgtatccaatgggcatttgacgatttgcccgatacttatgcgttt
atccagcaggggcagaattttatcggctttccggccattgtcgatgaaggcgatgcggtg
ggggtacggatttttgacactgagcaaaaagcggcggctgagcatcaggcgggtctattg
cggctgttccagttgtcgttgcgtaaggaatgcgcttatttgggcaaaaataatctgcaa
gccgccgctgctgaactggcttaccaccgtttagcggcgcacccgatcattaagcatgcc
gttaccgcttcctataaggaagatatgctgaaattgattttgcagcatgtttttatggac
gggcgcattatccgtacccagcaggcctttgagcatagcttgcagcaaaataagccgggg
ctgatgttggtggcgaatgatgcgggtaagttggcgttggaggtgatggctttgtacacg
gcggttaaggcgcagttacagcggctgaatgctaacgatccgctggccattgatgtcaac
gggcaattggcggttttggtctatgcgggttttttacgcacgaccccttatgagcagctt
aaggctgtgccgcgctatttaaaggcgattagttaccgtttggagaagctggataataac
ccgcaaaaagtccaggagctgaaccgttatgtgttgcgctattggaaggatgtggagaaa
aaagcccccaaaaatactattgtgcctgagcaggaggctttccgttggatgctggaagag
tttcgggtgtcgctgttcgcccagcatttgaaaacggcttatccgatttcggcgaaacgc
ttggataaggcgtgggatgagcggggttag
DBGET
integrated database retrieval system
