Methylibium petroleiphilum: Mpe_A0656
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Entry
Mpe_A0656 CDS
T00470
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpt
Methylibium petroleiphilum
Pathway
mpt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mpe_A0656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpt03019
]
Mpe_A0656
03009 Ribosome biogenesis [BR:
mpt03009
]
Mpe_A0656
Enzymes [BR:
mpt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mpe_A0656
Messenger RNA biogenesis [BR:
mpt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mpe_A0656
Ribosome biogenesis [BR:
mpt03009
]
Prokaryotic type
rRNA processing factors
Mpe_A0656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABM93618
UniProt:
A2SDH9
LinkDB
All DBs
Position
complement(688624..691620)
Genome browser
AA seq
998 aa
AA seq
DB search
MKRMLINATQSEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQFFKEGVTVRDAKIQDVISNGTELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEDREELKENLDQLEYPKGMSLIARTAGIGRSAPELQ
WDLNYMLKLWSAIDGAAKAGKGAFLIYQESSLVIRAIRDYFHADIGEILIDTDDIYEQAQ
QFMNHVMPESASRVKRYKDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVSV
DVNSARSTRGSDIEETATRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVETR
LRDALRTDRARVQFSSISKFGLLELSRQRLRPALSEGSHITCPRCNGTGHIRDTESSALQ
ILRIIQEESMKENTAAVHVQVPVEVTSFLLNEKRTEITKIELRQRTTVLLVPNKHLETPN
YKLERLRHDDPRLENLQASYTMIEEPDDEVGITRREKAKAKQEPVIKGVLPDLPAPVAAP
KPEPVAKAPVAAAPPVVAAPVPASRDAGGGGFFGWLKKLFGGDVPPAAAPAVSAPAAQPA
KPAREGGRDGQRDGGRGRRGGRDGQRGERTEARGERGERGEDRNRRGGGAGEQRDGRGRR
SERPEGAVAETAGLSADRPPRNEPRRGPRPESAPASAAEDLTLPLAAEGVAAADATENAE
GGEGARRRRRRGGRGRGERDEARSDAPEGAVEGAAVDAAPSTDEDSLPPRAEGEAAPDDE
TAGEGGEPRRRRRGGRGRRERGEGDNGAPVAAAPLSDVAGGDDAAASSSAADTVKPWWEA
TPTAEPTAAAEPAVAAPTPPQPADVALQALADVVSRPPVATPPASVPVAAPVVARAPAPA
PVAIEPVADAAPPAAAAALPPYALPIDDLAAVATSAGLQWVNSDADKVRAVQQAMADAPK
PVHVPREPKPVVAIDDGPLVLVETRKDLSQIKLPFEGR
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaatgccacgcaatcggaagaacggcgcctggcgatcgtcgac
gggcagaaactgctcgacttcgagaccgagatcgaggggcgcgaacagcgcaagggcaac
atctacaaggccgtcgtcacccgcgtcgagccgtcgctggaggcctgcttcgtcgactac
ggcgaggaccgccacggcttcctgccgttcaaggagatctccaagcagttcttcaaggaa
ggcgtgaccgtccgcgacgcgaagatccaggacgtgatctccaacggcaccgagctgctg
gtgcaggtcgagaaggaggagcgcggcaacaagggcgcggcgctgaccaccttcgtcagc
ctggccgggcgctacctggtgctgatgcccaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggaccgcgaggagctcaaggagaacctcgaccagctcgagtacccc
aagggcatgagcctgatcgcgcgcaccgccggcatcgggcgcagcgcccccgagctgcag
tgggacctgaactacatgctcaagctgtggagcgccatcgatggcgcggccaaggcgggc
aagggcgccttcctgatctaccaggagtcctcgctggtgatccgtgcgatccgggactac
ttccacgccgacatcggcgagatcctgatcgacaccgacgacatctacgagcaggcccag
cagttcatgaaccacgtgatgccggaatcggcctcgcgggtcaagcgctacaaggatgac
gcgccgctgttcagccgcttccagatcgagcaccagatcgagaccgcgttctcgcgcacg
gtgaacctgccctcgggcggcgcgatcgtgatcgaccacaccgaggcgctggtatcggtc
gacgtgaactcggcgcgctcgacgcgcggctccgacatcgaggagaccgcgacgcgcacc
aacctcgaggcggccgacgagatcgcgcgccagatgcggctgcgcgacctgggcggcctg
atcgtcgtcgacttcatcgacatggaggagagcaagaaccgccgcgaggtcgagacccgc
ctgcgcgacgcgctgcgcaccgaccgcgcgcgtgtgcagttcagctcgatcagcaagttc
ggcctgctcgaactgagccgtcagcgcctgcgcccggcgctcagcgaaggcagccacatc
acctgcccgcgctgcaacggcaccggccacatccgcgacaccgagtcttccgcgctgcag
atcctgcgcatcatccaggaagagtcgatgaaggagaacaccgccgccgtgcacgtgcag
gtgccggtggaggtcacgtccttcctgctcaacgagaagcgcaccgagatcaccaagatc
gagctgcgtcagcgcaccaccgtgctgctggtgcccaacaagcacctcgagacgccgaac
tacaagctcgagcgcctgcgtcacgacgacccccgtctggagaacctgcaggccagctac
acgatgatcgaggagccggacgacgaggtcggcatcacccggcgcgagaaggccaaggcc
aagcaggaaccggtgatcaaaggcgtgctgcctgatctgcccgccccggtggccgcgccg
aaaccggaaccggtggccaaggcgccggtggccgcagcgccgccggtcgtggcggcaccg
gtgcctgccagccgcgacgcgggcggcggtgggttcttcggctggttgaagaaactcttc
ggcggcgacgtgccgccggccgccgcacccgcggtcagcgcgcctgccgcacagccggcg
aagccggcccgtgaaggcggacgcgatggccagcgcgacgggggccgcggtcgccgcggc
ggacgcgatggccagcgcggcgaacgcaccgaagcccgtggcgaacgcggtgaacggggc
gaggaccgcaaccgccgtggcggtggtgcgggagaacaacgcgacggccgaggccgccgc
agcgagcgcccggaaggtgctgtcgctgagacggccggcctgagcgccgaccgcccgccg
cgcaatgagccgcgccgcggcccgcgtccggaatcggcccccgcatcggcggccgaggac
ctgacactgcctctggctgccgagggcgtggctgcagccgacgccacggaaaatgcggag
ggaggtgaaggcgcacgccgccgccgccgccgcggtggccgcggtcgcggtgagcgtgac
gaggcccgcagcgatgcgcccgaaggcgcggtcgaaggcgccgccgtcgacgctgcaccg
agcaccgacgaagacagcctgccgccgcgtgccgaaggcgaggccgcaccggacgacgag
accgccggcgaaggcggcgagccgcgccgccggcgccggggcggccgcggtcgccgcgag
cgcggcgagggcgacaacggcgcgccggtcgccgcagcgccgctgagcgatgtggccggt
ggcgacgacgctgcggcgtcatccagcgcggccgacaccgtcaagccctggtgggaagct
accccgaccgccgagcccaccgctgcggcagagccggccgtcgcggcgcccacgccgccg
cagcccgcggacgtcgcgttgcaggcgttggccgacgtggtgtccaggcctcccgtggcc
acgccgcccgcctcggtgccggtcgctgcaccggtggtggcgcgcgcaccggcacccgcg
ccggtcgcgatcgaaccggtcgccgatgctgcgccgcctgcggctgccgccgccttgccg
ccctacgcgctgccgatcgacgacctcgccgcggtggccaccagcgcaggcctgcagtgg
gtgaactccgacgcggacaaggttcgcgcggtgcagcaggcgatggccgatgcaccgaag
ccggtgcatgtgccgcgcgagccgaagccggtggttgccatcgacgacggcccgctggtg
ctggtggagacgcgcaaggacctgtcgcagatcaagctgccgttcgaaggccgctga
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