Marichromatium purpuratum: MARPU_04110
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Entry
MARPU_04110 CDS
T03650
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpur
Marichromatium purpuratum
Pathway
mpur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARPU_04110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpur03019
]
MARPU_04110
03009 Ribosome biogenesis [BR:
mpur03009
]
MARPU_04110
Enzymes [BR:
mpur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MARPU_04110
Messenger RNA biogenesis [BR:
mpur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MARPU_04110
Ribosome biogenesis [BR:
mpur03009
]
Prokaryotic type
rRNA processing factors
MARPU_04110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHF03154
UniProt:
W0E1R6
LinkDB
All DBs
Position
complement(881126..884152)
Genome browser
AA seq
1008 aa
AA seq
DB search
MKRMLINATQPEELRVATVDGQLLYNLDIESPGRELKKANIYKGTITRVEPSLEAAFVDY
GAERHGFLPLKEIARAYFEPDSVKPGSRINIKEAVREGREVVVQIDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGVSRRIEGQDRSELRDAMSQLEIPEDMGLIVRTAGVGKSVEE
LQWDLDYLLQLWKAIETSGEQRKAPFLIYQESDVIIRSIRDYLRADIGEIVIDDPAVYER
AETFIRQVMPQNIKKLRRYDDEVPLFTRYQIETQIESAFQREVRLPSGGSIVIDHGEALT
AIDINSARATKGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPPKNQREVE
NRLREALKQDRARVQVARISRFGLLEMSRQRLRPSLGESSQQVCPRCKGQGTIRGVDSLG
LSILRVIEEEAMKDNTQRILAHLPVSVATFLLNEKRRTIVDIEQRQEVEILLVPNEHLLT
PDYQIERIRTQDVTKQDEGRQSYEIAAAPPEPEAESRYTRLTTPPRIEEPAVKQVAPTTP
APQQRPTPQRTTPKTPVGLQEPERSEPESLLKRIWTGLFAPRQIEAPASPRSEPSRQSER
GHAKPRSEGEGGKSRERKRTAAEGRGGEGEEGGRGARNGEGRNRRSSTRNRPRRNENGGR
TAKGKGGDERTREPQQRQGGEPTPPRGETDAALEHSKRAPEVKAEQPAPETTKGNGENTT
PQQDGGGDRPRSPRRRRGGRNRRRSNPANGGVEQSNGNERERTSDESQVEQNATAEASSP
ETRHSPQALLPPPQTGAEAKQSDRNRSATRPKSEPSRNPSNAETAKPEGAKDKPRAETAK
PEGVKDKPSTETAKPEGAKGKPSTETAKPEGAKGKPSTETAKPEGVKDKPSTETAKPEST
KEQSSTETARSQAAEDKQGTAATKPKAAETHPAPSARSERGEHKSAATTNSEPTRDGQPA
SPPEPRSQTIPGAASKPATEQPAPAPERAPRSAAAVESEKRITQEDGD
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaactcagccggaagagttgcgcgtcgcgaccgtcgac
ggtcaactgctctacaacctcgacatcgaatcccccggccgggaactgaagaaggccaac
atctacaagggcaccatcacccgcgtcgagcccagcctcgaggccgccttcgtcgactac
ggcgccgagcgccacggcttcctccccctcaaagagatcgcccgcgcctacttcgagccc
gactcggtcaagcccggctcgcgcatcaacatcaaggaggcggtgcgcgagggccgcgag
gtggtggtccagatcgacaaggaggagcgcggcaacaagggtgcggcgctcaccaccttt
atctcgctggccgggcgctatctggtgctgatgcccaacaacccgcgcgccggtggggtg
tcgcgtcgcatcgagggccaggaccgcagcgagttgcgcgacgccatgagccagctcgag
atccccgaggacatggggctgatcgtgcgcaccgccggcgtcggcaagagcgtcgaggaa
ctgcaatgggatctcgactacctgctgcagctgtggaaggcgatcgaaacctccggcgag
cagcgcaaggcgcccttcctgatctatcaggagagcgatgtcatcatccgctcgatccgc
gactatctgcgcgccgacatcggcgagatcgtcatcgacgaccccgccgtctacgagcgc
gccgagaccttcatccgtcaggtgatgccgcagaacatcaagaagctgcgccgctacgac
gacgaggtgccgctgttcacccgctaccagatcgagacccagatcgagtcggccttccag
cgtgaggtgcgcctgccctcgggcggctcgatcgtgatcgaccacggcgaggcgctcacc
gccatcgacatcaactcggcgcgcgccaccaagggcgccgacatcgaggagacggcgctc
aacaccaacctcgaggcggccgacgagatcgctcgccagctgcgcctgcgcgacctcggc
ggcttgttcgtgatcgacttcatcgacatgaccccgccgaagaaccagcgcgaggtcgag
aaccggctgcgcgaggcgctcaagcaggaccgcgcccgcgtccaggtggcgcggatttcg
cgcttcggcctgctggagatgtcgcgccagcggctgcgtccctcgctcggcgaatcgagc
cagcaggtgtgcccgcgctgcaagggccagggcaccatccgcggagtcgattcgctgggc
ctgtcgatcctccgcgtgatcgaggaggaggcgatgaaggacaacacccagcgcatcctc
gctcacctgccggtcagcgtcgccaccttcctgctcaacgagaagcgtcgcaccatcgtc
gacatcgagcagcgccaggaggtcgagatcctgctggtcccgaacgagcacctgctcacc
cccgattaccagatcgagcgcatccgcacccaggacgtcaccaagcaggacgagggtcgg
cagagctacgagatcgccgcggccccgcccgagccggaggccgagtcgcgttatacccgc
ctgaccacgccgccgcgtatcgaggagccggcggtcaagcaggtcgcccccaccaccccg
gcgccgcagcagcgcccgaccccgcagcggaccacgcccaagaccccggtcggactccag
gagcccgagcgcagcgaacccgagagcctgctcaagcggatctggaccgggttgttcgca
ccacgccagatcgaggcaccggcgagcccccggagcgaaccatcgcgccaatccgagcgt
ggtcacgccaagccccgcagcgagggtgagggcggcaagtcccgcgagcgcaagcgcacc
gccgcggaggggcgcggcggcgagggcgaagagggcggccgcggcgcgcgcaacggcgag
ggtcgcaaccgccgcagcagcacacgcaaccgcccccgtcgcaacgagaacggcggccgc
accgccaagggcaagggaggcgacgagcgcacccgcgagccacagcaacgtcagggcggc
gaacccacgccgccgcgcggcgagaccgacgcggccctggagcactccaagcgtgcccca
gaggtcaaggcggaacagccggcaccggagacgaccaagggcaacggcgagaacaccacg
ccacagcaggatggcggcggcgaccggccgcgctcgccccggcgccggcgtggcgggcgc
aatcgccgccgcagcaacccggccaacggcggcgtcgagcagtccaacggcaacgagcgc
gagcgtacatcggacgagtcacaggtcgaacagaacgcaacggcggaggcatcgtccccc
gagacccggcacagtcctcaggcgctcctgccgcccccccagacaggcgccgaggccaag
cagtcggaccggaacaggtcggccacgcggccgaagtcggagccgagcagaaacccatcg
aacgccgagaccgccaagccggagggcgccaaggacaagccgcgcgccgagaccgccaag
ccggaaggcgtcaaggacaagccgagcaccgagaccgccaagccggagggcgccaagggc
aagccgagcaccgagaccgccaagccggagggcgccaagggcaagccgagcaccgagacc
gccaagccggagggcgtcaaggacaagccgagcaccgaaacagccaagccggagagcacc
aaggagcagtcgagcaccgagaccgccaggtcgcaggccgccgaggacaagcagggcacc
gcggcgaccaagccgaaggccgccgagactcaccctgcgccgagcgcgagatcagagcgc
ggcgagcacaagagcgccgcgacgaccaactccgaaccgacccgcgacgggcagccggcc
tcgccccccgagccgaggtcacagacgatccccggcgcggcctccaaacccgccaccgag
cagccggcaccagcgccggagcgcgcgccgcggtctgcagccgccgtcgagagcgagaaa
cggatcacgcaggaagacggcgactga
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