Marichromatium purpuratum: MARPU_06230
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Entry
MARPU_06230 CDS
T03650
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mpur
Marichromatium purpuratum
Pathway
mpur02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mpur00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MARPU_06230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpur03021
]
MARPU_06230
Transcription machinery [BR:
mpur03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MARPU_06230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4715
Motif
Other DBs
NCBI-ProteinID:
AHF03507
UniProt:
W0DYH4
LinkDB
All DBs
Position
1350097..1351962
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AA seq
621 aa
AA seq
DB search
MDQEHHQSQLKQLIARGKEQGFLTYAEVNDHLPPGIVEAEQIEDIVRMINDMGIMVHETA
PDSDDQTLSDSAVSDDEAAEAAAAALASVDSEFGRTTDPVRMYMREMGSVELLTREGELI
IAKRIEDGLNQVLAALSVYPRAVERLIELFDQVEREEKRLTDVISGFNDATDDEPATPVQ
HGQSAQQKDKNNAAADDDADHGDADDDDDEDDTPVDTGPDPEDAARRAKLLREHFAVMRE
ALEQYGRDDERSRKAMAETSEVFLEFKLVAAVFQELAELLRGTIERIRAQERQIQSLCVR
QAGVPRKAFIEGFSGNESSPEWLDKLLASGKPYAARLEPLAVDVRRAQRKLQDLERENFL
TITEVKDVNRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMIQE
MGREATPEELAIRMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDAGVVSPVD
SATSEGLREATQNMLASLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPTRSERLRSFLDAD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagaacatcatcagtcgcagctgaagcagctgatcgccaggggcaaggaacaa
gggtttctgacctatgccgaggtcaacgatcacctgcctcccggtatcgtcgaggccgag
cagatcgaagatatcgtgcgcatgatcaacgacatggggatcatggtccatgaaaccgcg
cccgactccgatgaccagaccctgagcgattctgcggtctccgacgacgaggccgcggag
gctgcggcggcggcgctggcctcggtcgacagcgagttcggtcgtaccaccgacccggtg
cggatgtacatgcgcgagatgggttcggtcgagctgctcacccgcgagggcgagctgatc
atcgccaaacgcattgaggacggcctcaaccaggtgctcgccgcgctgtcggtctatccg
cgtgcggtcgagcgcctgatcgagctgttcgaccaggtcgagcgtgaggagaagcgcctg
accgatgtcatctccggcttcaacgacgccaccgatgacgagccggccactccggtccag
cacggtcagtccgcccagcagaaggacaaaaacaacgccgctgccgacgacgacgccgat
cacggcgacgccgacgatgacgacgacgaagacgacaccccggtcgacaccggccccgat
ccggaagacgcggcacgccgcgccaagctgctgcgcgagcacttcgcggtgatgcgcgag
gcactcgagcagtacggtcgcgacgacgagcgttcgcgcaaggcgatggccgagacttcc
gaggtcttcctcgagttcaagctggtcgccgcagtgttccaggagctggccgagctgctg
cgcggcaccatcgagcgcatccgcgcccaggagcgccagatccagtcgctctgcgtgcgt
caggcaggcgtgccgcgcaaggccttcatcgagggcttcagcggcaacgagagcagcccc
gagtggctcgacaagctgctcgccagcggcaagccctatgccgcgcgtctcgagcccctg
gccgtcgacgtgcgtcgcgcccagcgcaagctccaggacctcgagcgcgagaacttcctc
accatcaccgaggtgaaggacgtcaaccgcaagatgtccatcggcgaggccaaggcccgt
cgcgccaagaaggagatggtcgaggccaacctgcgactggtgatctcgatcgccaagaag
tacaccaaccgcgggctgcagttcctcgacctcatccaggaaggcaacatcggcctgatg
aaggcggtcgacaagttcgaataccgtcgcggctacaagttctcgacctacgccacctgg
tggatccgtcaggcgatcacccgttcgatcgccgaccaggcacgcaccatccgcatcccg
gtgcacatgatcgagaccatcaacaagctcaaccgcatctcccgtcagatgatccaggag
atgggccgcgaggccacccccgaggagctggccatccgcatggacatgcccgaggacaag
gtgcgcaaggtgctcaagatcgccaaggagccgatctccatggagaccccgatcggtgac
gacgaggactcgcacctcggcgacttcatcgaggacgccggcgtcgtctccccggtcgac
tcggccacctccgaggggctgcgtgaggccacccagaacatgctcgccagcctcacctcg
cgcgaggccaaggtgttgcgcatgcgtttcggcatcgacatgaacaccgaccacaccctc
gaagaggtcggcaagcagttcgacgtcacccgcgagcgcatccgccagatcgaggccaag
gccctgcgcaagctgcgccacccgacccgctcggaacgcctgcgcagcttcctcgacgcc
gactga
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