Marichromatium purpuratum: MARPU_11505
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Entry
MARPU_11505 CDS
T03650
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpur
Marichromatium purpuratum
Pathway
mpur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MARPU_11505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpur03400
]
MARPU_11505
Enzymes [BR:
mpur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MARPU_11505
DNA repair and recombination proteins [BR:
mpur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MARPU_11505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
AAA_30
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHF04397
UniProt:
W0E108
LinkDB
All DBs
Position
2594554..2598045
Genome browser
AA seq
1163 aa
AA seq
DB search
MNQATSATLHSPLEPPLPKGVSERRCWGGLHGAGAALAIATAASRHPGLVLALAEDVQAA
RRLQAELGFFLAGSALPVLGFPDWETLPYDVFSPLPELVSERLLTLHRLPGLTRGVLVVP
VATLLQRLPPRDYVDAHSLVLACGDRLDLDATRLRLEHAGYSGVSQVMGHGEYAVRGSLL
DVFPMGSQQPLRIDLFDDEVESIRLFDPETQRSHERIEQVRMLPAREFPFDEQAIVGFRS
RYRASIEGDPQRSLIYREVSEGRTPGGIESYLPLFFDDTATLFDYLPATTLAIEPASGRE
AGAGFLASVAERHEQRRHDAERPLLAPEQLYLGVDELAAALNRMPGVNYRTAPFDTRPKG
YAGVDNFATLDLPPLELQARAAEPARALQRFLATPGQRVLLVAESTGRRELLAEQLRDFG
IHASQVADWGAFVNGEQPLALTVAPLEQGLRLADQGLALITETQIYGERVRQERRRRARE
RDGDAVVRNLTELTEGAPVVHEEHGVGRYLGLQTLEVGGSSTEFLTLGYAKGDKLYVPVS
SLHLISRYTGATPEQAPLHRLGGEQWERIKRKAAQKACDVAAELLDVYARRAARQGVASP
APDTDYGAFAAAFPFEETPDQLRAIDSVLADMADTKPMDRVVCGDVGFGKTEVAMRAAFV
AANGGRQVVVLVPTTLLAQQHFENFSDRFADWPIRIESLSRFRTAREQKQVFAGLAEGTI
DIVVGTHKLLQPGIEFHDLGLVIVDEEHRFGVRHKERLKQLRSEVDILTLTATPIPRTLN
MAMSGLRDLSIIATPPVERHPIKTFVSPWNDGLIQEAVQRELKRGGQVYFLHNEVETIEN
QAQKLEALIPSARVQIAHGQMRERELERIMRDFYHQRFNLLVCTTIVESGIDVPSANTIV
INRADKLGLAQLHQLRGRVGRSHHRAYAYLITPPTKAMTTDAVKRLEAIESMEDLGAGFT
LATHDLEIRGAGELLGDEQSGQIAEVGFSLYMELLEHAVEALKAGRTPELDRPLSHGAEI
DLGVPALLPSDYLPDVHARLVMYKRIASATSKEALRELQVEMIDRFGLLPEPAKRLLEIT
ALKLRVQPWGIVKIEVGIGSGRICFEDNPRIDPARLIGLIQEQPKVYRLDGGDTLRFYRE
MPEPEQRLRQVEQLVERLTGEGR
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccaggccacatccgccaccctgcactccccgctcgaaccaccgctgccaaaaggc
gtgagtgaacgcaggtgctggggaggactgcacggggccggcgcggcgctcgccatcgcc
actgccgccagccgtcaccccgggctggtgctggcgttggccgaggacgtgcaggccgcg
cggcggttgcaggcggagctgggcttcttcctcgccggtagcgcactcccggtgctcggc
ttccccgactgggagaccctgccctacgacgtcttctcaccgctgcccgaactggtctcc
gagcggctgctgaccctgcaccgcttgccgggtctcacccgcggcgtgctggtggtgccg
gtggcgaccctgctccagcgcctgccgccgcgcgactatgtcgatgcccactcgctggta
ctcgcctgcggcgaccggctcgatctcgacgccacccgactgcggctcgaacacgccggc
tacagcggtgtctcgcaggtcatgggacacggcgagtacgcggtacgcggctcgctgctc
gacgtcttcccgatgggcagccagcaaccgttacgcatcgacctgttcgacgacgaggtc
gagagcatccgtctgttcgaccccgagacccagcgctcgcacgagcgcatcgagcaggtg
cggatgctgccggcgcgcgagttccccttcgacgagcaggcgatcgtcggcttccgcagc
cgctatcgcgccagcatcgagggcgacccacagcgcagtctgatctatcgcgaggtctcg
gaggggcgcacaccgggcggcatcgagtcctatctgccgctgttcttcgacgacaccgcc
accctcttcgactatctgcccgccaccaccctggcaatcgaaccggcgagcggtcgcgag
gccggcgcgggcttcctcgccagcgttgccgaacgccatgagcagcgtcgccacgacgcc
gagcgcccgctgctcgcccccgagcagctctatctcggcgtcgacgaactggccgccgcg
ctcaaccgcatgcctggggtgaactaccgcaccgcaccgttcgacacccgccccaagggc
tatgccggagtcgacaacttcgccaccctcgatctgcccccactggagctgcaggcgcgc
gccgccgagccggcacgagcgctgcagcgcttcctcgccaccccggggcagcgggtgctg
ctggtagccgagagcaccgggcggcgcgagctgctcgccgagcagctgcgcgacttcggc
atccacgccagccaggtcgctgattggggcgccttcgtcaacggcgagcaaccactggcg
ctcaccgtcgccccgctcgagcaggggctgcggctcgccgaccaggggctggcgctgatc
accgagacccagatctatggcgagcgggtacgccaggagcgtcgccgtcgtgcccgcgag
cgcgacggcgacgcggtggtgcgcaacctcaccgaactgaccgagggcgcgccggtggtc
cacgaggagcacggcgtcgggcgctatctggggctgcagacgctcgaggtcggcggcagc
agcaccgagttcctcaccctcggctatgccaagggcgacaagctctatgtcccggtcagc
tcgctgcacctgatctcgcgctataccggcgccacccccgagcaggcaccgctgcaccga
ctcggcggcgaacaatgggaacggatcaagcgcaaggcggcgcagaaggcctgcgacgtc
gccgccgaactgctcgacgtctacgcccgacgcgccgcccgtcagggcgtggccagtccc
gcgcccgataccgactatggcgccttcgccgccgccttccccttcgaggagaccccggac
cagctgcgcgcgatcgacagcgtgctcgccgacatggccgacaccaagccgatggatcgg
gtggtctgcggcgatgtcggcttcggcaagaccgaggtggcgatgcgcgcggccttcgtc
gccgccaacggtgggcgccaggtggtggtgctggtgccgaccaccctgctcgcccaacag
cacttcgagaatttctccgaccgcttcgccgactggccgatcagaatcgagagcctgtcg
cgctttcgcaccgcgcgcgaacagaagcaggtgttcgcgggattggccgagggcaccatc
gacatcgtcgtcggcacccacaagctgctccagccaggtatcgagttccacgacctgggg
ttggtgatcgtcgacgaggagcaccgcttcggagtgcgccacaaggagcgactcaagcag
ctgcgcagcgaggtcgatatcctcaccctcaccgccacgccgatcccgcgcaccctcaac
atggcgatgtcggggctgcgcgacctgtcgatcatcgccaccccgccggtcgagcgtcac
ccgatcaagaccttcgtcagcccgtggaacgacggcctgatacaggaggcggtacaacgc
gaactcaagcgcggcggtcaggtctacttcctccacaacgaggtcgagaccatcgagaac
caggcgcagaagctcgaggcgctgatcccgagcgcgcgtgtccagatcgcccacggccag
atgcgcgagcgcgaactcgaacggatcatgcgtgacttctaccaccagcgcttcaacctg
ctggtgtgcaccaccatcgtcgagagcggtatcgacgtgcccagcgccaacaccatcgtc
atcaaccgcgccgacaagctcggcctggcccagctccatcagctgcgcggccgggtcggg
cgctcgcaccaccgcgcctacgcctatctgatcaccccgccgaccaaggcgatgaccacg
gacgcggtcaagcggctggaggcgatcgaatcgatggaggacctcggcgcaggcttcacc
ctcgcgacccacgaccttgagatccgcggtgccggcgagctgctcggtgacgagcagtcg
ggacagatcgccgaggtcggcttctcgctctacatggagctgctcgagcacgcggtcgag
gcgctcaaggccgggcgtaccccggaactcgatcgaccgctcagtcacggcgccgagatc
gacctgggggtcccggcgctgctgccgagcgactatctgcccgacgtgcacgcccgactg
gtgatgtacaaacgcatcgccagcgccaccagcaaggaagcgctgcgggaactacaggtg
gagatgatcgaccgtttcgggctgctgcccgaaccggccaagcgtttgctggagatcacc
gcactgaagctgcgggtccagccatgggggatcgtcaagatcgaggtagggatcggcagc
gggcggatctgcttcgaggacaatccgcggatcgatccggcccggctgatcgggctgatc
caggagcagcccaaggtctaccggctcgatggcggcgacacgctcaggttctatcgcgag
atgcccgaacccgagcagcgactgcgccaggtcgagcagctcgtcgagcgtcttaccggc
gagggccgttga
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