Myroides profundi: MPR_0128
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Entry
MPR_0128 CDS
T03631
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpw
Myroides profundi
Pathway
mpw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MPR_0128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpw03400
]
MPR_0128
Enzymes [BR:
mpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MPR_0128
DNA repair and recombination proteins [BR:
mpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MPR_0128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AJH13347
UniProt:
A0AAJ4W149
LinkDB
All DBs
Position
complement(145544..148906)
Genome browser
AA seq
1120 aa
AA seq
DB search
MDIKQRFQESSKTKQLLQDLQSRGNKIYLKGLIGSAISFQIEALFREADAPFLLIFNDKE
EAAYYLNDLETLVNKTDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRISSRKKPAIIVS
YTEAIFEKVVTKKVLEKNTLKVHQGDKLSIDYINEVLFEYNFKRVDFVAEPGEFSVRGGI
IDVFSFSNDNPYRIEFFGDEIDSIRTFDVETQLSVDKQKKITIIPNVENKFSAEVRESFL
EYISEKTIVLTQHTAMTVEQLDRQFDRAVDTFSKLNKDLKHKEPKDMFLDGQSFLHKLEL
FTLLELNDTKLMDVNKTVEFHIKPQPSFNKQFDLLARNLNDNTDNGFYNYLFCSNENQAK
RFKDIFESLKEDDNHKVVQSFKTIVMPIFEGFIDEEKQIVCYTDHQIFERYHKFSIKNGY
TKKQTITLKELNSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVYVSI
HSLHKISKYNGKDGAVPKIHKLGSAAWKTLKNKTKARVKHIAFNLIQLYAKRRLQKGFQC
APDSYLQHELESSFIYEDTPDQLKATQEVKADMEQERPMDRLVCGDVGFGKTEVAIRAAF
KMVDNGKQVAILVPTTILAFQHYQTFTERLKDMPVRVSYINRFRTAKQKAEILKDLESGK
IDILIGTHQLVNKGIVFKDLGLLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTL
QFSLMAARDLSVISTPPPNRYPIETNVVGFNEEVIRDAVSYEIERGGQVYFINNRIENIR
EVAGMIQRLVPDAKVGIGHGQMDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTI
LINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEEARKRIQALEQFSDLGSGL
NIAMKDLEIRGAGDILGGEQSGFINEIGFETYQKIMQEAIEELKANEFKDLYEEENKEEN
KVFVKDTQIDTDFEILFPDEYINNITERLNLYNELSLITNEEVLQQYEQRLIDRFGALPR
QAIALLNSLRIKWHAANMGIEKIVMKQGKMICYFLGDQQSDFYQSAKFRKVLIFVQHRSN
ICEMKEKQTKNGLRLLLTFKNVKSIKQGLEYIELLDSAEA
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaacaacgctttcaagagtcttcaaaaacaaaacaactcctccaagaccta
cagtctagaggtaataaaatatatctaaaaggattaataggctcggctatctcatttcag
atagaagccttattccgagaagctgatgctccttttttattaatattcaatgataaagaa
gaagctgcttattacctaaatgatctagagacattagtcaataaaactgatgttctcttc
tacccaggttcttatagaagaccttatcagatagaagaaacagataatgctaatgtacta
ctacgtgcagaggtattgaatagaattagttctcgtaagaagcctgctatcattgtttct
tatacagaggctatattcgaaaaagtggttactaaaaaggtattagaaaaaaatacactt
aaagtacatcagggagataaactatctatagactacatcaatgaggtattgtttgagtac
aattttaaacgagttgatttcgtagctgagccgggagagttctctgtaagaggaggaatt
atagacgtattctctttctctaatgacaatccgtaccgtatagaattcttcggagacgaa
atagatagtatccgtaccttcgatgtagaaactcagttatctgtagataaacaaaagaaa
atcactatcattcccaacgtagagaacaaattctctgcagaggtaagagagagtttctta
gaatatatttctgagaagactattgtactaacgcagcatactgctatgacagtagaacag
ctagaccgtcagttcgatagagctgtagataccttctctaagttaaataaagatttaaag
cacaaggaaccaaaagatatgttcttagacggacaatctttcttacataagctagagcta
tttacgttactggagctgaatgataccaaactgatggatgtcaataagaccgttgagttt
cacatcaaacctcaaccttcgtttaacaaacagtttgacttactggctcgtaacctgaat
gacaatacagacaatgggttctataactacctattctgctctaatgagaatcaggctaag
cgcttcaaagatatatttgagtctcttaaagaagatgataatcacaaagtagtacaatca
ttcaagacaatcgtgatgccgatcttcgaagggtttatcgatgaggagaagcaaatcgtc
tgctatactgaccaccaaatcttcgaacgctatcacaagtttagtatcaagaatggatat
actaaaaaacaaacgatcacactaaaagagctaaactctctttcggtaggtgattatgta
acgcatatagatcatggtatcggtaagttcggagggttacaaaaaatacaagtagaagga
aagacacaagaggctatcaagctagtatatgctgataatgatatcgtctatgtaagtatt
cactctctacacaaaatatcaaaatacaatggtaaagatggggctgtacctaagatccat
aaattaggttcggctgcatggaaaaccttgaagaataaaacaaaggctcgtgttaagcac
attgcctttaaccttattcaactatatgcaaaacgccgtttgcagaaaggattccaatgt
gcccctgatagctatttacagcatgaattagaaagttcttttatctacgaagacactcct
gatcagctaaaagcgacacaagaggtaaaggccgatatggaacaagaaagaccaatggat
cgattggtatgtggggatgtaggttttggaaaaactgaggtagctattagagctgccttt
aaaatggtcgataatggcaaacaagtcgcaatattagtccctacgactatcctagccttt
cagcattatcagacattcacagagcgtctgaaggatatgcctgtacgtgtgtcttatatc
aatagatttagaactgctaaacaaaaagcagaaatattaaaagacctggaatctggtaag
atagacatcctaatcggtacacatcagttagtgaataaaggcattgtgtttaaagaccta
gggttattaattatagatgaagaacaaaaattcggagtagctgtaaaagataagttgaaa
acgatatcagagaatgtggatacacttacacttactgctacacctatcccgcgtacacta
cagttctctctgatggctgcacgcgacttatctgtgataagcactcctccaccaaataga
tatcctatcgaaacaaatgtggtaggatttaatgaagaggtgattagagatgctgtgtct
tatgagatagaaagaggtggtcaagtgtacttcatcaataatcgtatagagaatattaga
gaagtagcgggtatgatacaacgtctcgtaccagatgctaaagtaggtatcggccatggt
cagatggatggtaaaaagttagaagaactaatgctcgcatttatgaatggggagttcgat
gtactcgttgctactaccattatcgagagtggattagacgtacctaatgctaatacaata
ttaattaataacgcaaataacttcgggctatctgacttacatcagatgagaggtcgtgta
ggacgaagtaataaaaaagcgttctgttacttcatctgtcctccttattctgcgatgaca
gaagaagcgagaaagagaatacaggcactagagcaatttagtgacttgggtagtggtcta
aacatcgctatgaaagacttagagattagaggagctggtgatatcttaggaggtgaacag
agtggtttcatcaatgaaataggattcgagacgtatcaaaagatcatgcaagaagctatc
gaagagcttaaggctaacgagtttaaagacctatacgaagaagagaataaagaagaaaac
aaggtattcgtaaaagatactcagatagatactgacttcgagatattgttccctgatgag
tatattaataatatcacagagcgactaaacttgtataacgaactgagcttaatcacgaat
gaagaagtcttgcagcagtatgaacagcgattaatagaccgattcggtgcactgccacgt
caggctattgctttattaaatagcttacgcatcaaatggcatgcagctaatatgggaata
gaaaagatcgtgatgaaacaaggaaagatgatttgttacttcttaggagatcaacagtca
gacttctatcaatctgctaaatttagaaaggtattaatcttcgtacaacatcgttctaat
atctgtgagatgaaagagaaacaaacaaagaatggactgagactcttacttacttttaaa
aatgtaaagtctatcaaacaaggtttagaatacattgaacttttggattcagctgaagct
taa
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