Myroides profundi: MPR_1545
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Entry
MPR_1545 CDS
T03631
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mpw
Myroides profundi
Pathway
mpw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPR_1545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpw03019
]
MPR_1545
03009 Ribosome biogenesis [BR:
mpw03009
]
MPR_1545
Enzymes [BR:
mpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MPR_1545
Messenger RNA biogenesis [BR:
mpw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MPR_1545
Ribosome biogenesis [BR:
mpw03009
]
Prokaryotic type
rRNA helicases
MPR_1545
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
MatB
CoA_binding_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJH14727
UniProt:
A0AAJ4W1H9
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All DBs
Position
complement(1734647..1736530)
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AA seq
627 aa
AA seq
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MNNFEQLGLNESLLSAIKDMGFENPSEIQQKAIPLLLEKDTDIVALAQTGTGKTAAFGFP
LIQKIDVSNKNTQGLILSPTRELCLQIANEIKQYSKYVKGLHSVAVYGGASITEQAKDVK
RGAQIIVATPGRMQDMINRGMVNIKNINYCILDEADEMLNMGFYEDITSILADTPKEKNT
WLFSATMPQEVARIAREFMKTPEEITVGHKNQGNTNVSHEFYLVSARDRYPALKRLADAN
PDIFSVVFCRTKRDTQSIAEKLIEDGYNAAALHGDLSQAQRDAVMKSFRGKQIQMLVATD
VAARGIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKSGTSMVIVTKSELRKIQQIERI
IKTKFEEKPVPSGIEICEIQLFHLANRIKEVEVNTEIEAYLPAITELLKDFDKEEIIKKV
VSVEFNRFLEYYQKASNSLSSVSAGRNNSKEVPTDGAVRFFVNLGAKDNLDWMTLKDFLR
DTLELGRDDLFKVDVKDGFSFFNTEAEHAEKVMETLNGLEYQGRRVNVEISNNDGGRNGG
RRDHNNRKGGFRGGERRSEGGFRGGERRSSNRSSEGGFRGGERRSDRSSSEGRGERRSDR
SSERAPRNERGSRRSSEGDSSRRTRRN
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatttcgaacaattaggattaaatgaatctcttttatctgcgatcaaggatatg
ggatttgaaaatccatcagagatccagcaaaaggcgattccattactattagagaaagat
accgacattgttgcgttagcccaaacggggactgggaaaaccgcagcttttggttttcct
ttgattcagaagatagacgtttctaataagaatacacaaggtcttatcttatcgccgact
agagagttatgtttgcaaatcgcaaacgaaatcaaacagtactcgaagtatgtaaaagga
cttcattcagtagctgtttatggaggggctagcattacagaacaggcaaaagacgtaaaa
cgtggagcacaaattatcgtcgctactcctggtagaatgcaagacatgattaaccgtggt
atggttaacattaaaaacattaattactgtatcctagatgaagcagatgaaatgcttaac
atgggattctatgaggatatcacgtctattttagcggatactccaaaagaaaaaaacaca
tggttattctctgctactatgccgcaagaggttgcgcgcatcgcaagagagtttatgaaa
actccagaagaaattactgtaggtcataaaaaccaaggtaatactaatgtaagtcatgaa
ttttatttagtatctgctagagaccgctacccagcgcttaaacgtttagcagatgcaaat
ccagatattttctctgtagtgttctgtagaacaaagagagatacgcaatctattgctgaa
aaacttatcgaggatggatacaacgctgctgcattacacggagacttatctcaagctcaa
cgtgacgcagtaatgaaatcattccgtggtaaacagatacaaatgcttgtagctactgac
gttgctgctcgtggtatcgacgtagatgacattactcacgtagtaaactaccaattacct
gacgaaatcgaaacgtatactcaccgtagtggacgtactggacgtgctggtaaatcaggt
acttctatggttatcgtaacgaaaagtgaattaagaaaaattcaacaaatcgaaagaatc
atcaaaactaaatttgaagagaaaccagttccatctggaattgagatttgtgaaattcaa
ttgttccacttagcgaatagaattaaagaagtagaagttaacacagagattgaggcttat
ttacctgcaattactgagttattaaaagacttcgacaaagaagaaatcattaaaaaagta
gtttctgttgaatttaatagattcttagaatactaccaaaaagcttctaacagcttatct
agtgtatctgctggaagaaacaattctaaagaagttcctacagacggagcagtacgtttc
ttcgttaacttaggtgctaaggataacttagactggatgacgttaaaagatttcttacgt
gatactttagagttaggtcgtgatgacttattcaaagttgatgtaaaagatggtttctca
ttcttcaacactgaagctgaacacgctgaaaaagtaatggaaacattaaacggtcttgaa
tatcaaggacgccgtgtgaatgttgaaatttctaacaatgatggtggtagaaacggtgga
cgccgtgaccataacaaccgtaaaggtggattcagaggtggagaaagaagatctgaaggt
ggatttagaggtggtgaaagaagatcatctaatagatcatctgaaggaggattcagaggt
ggagagagaagatcggatagatcatcatctgaaggacgtggagaaagaagatcagacaga
tcatcagaaagagctcctcgtaacgaacgcggatctagaagaagtagcgaaggagattca
tctagaagaactagaagaaactaa
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