Methanolobus psychrophilus: Mpsy_2112
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Entry
Mpsy_2112 CDS
T02280
Name
(GenBank) Exosome subunit Csl4
KO
K07573
exosome complex component CSL4
Organism
mpy
Methanolobus psychrophilus
Pathway
mpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mpsy_2112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpy03019
]
Mpsy_2112
Messenger RNA biogenesis [BR:
mpy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Mpsy_2112
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Mpsy_2112
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
ECR1_N_2
OB_RRP5_4th
HypA
EXOSC1
Zn_ribbon_NUD
Cas12f1-like_TNB
DUF7129
Zn_Tnp_IS91
RUBY_RBDX
Spt4
Auto_anti-p27
Zn_ribbon_RPB9
DmmA-like_C
Trm112p
Motif
Other DBs
NCBI-ProteinID:
AFV24316
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All DBs
Position
2046365..2046934
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AA seq
189 aa
AA seq
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MDAKESVFVMPGDLVGTTEEFTAGEGTYIDVGDIHSIGTGYVHIDRNSRVISVLPKTKTP
PQLTEGDIVVGSVVNIRESVVLVAIGAIRGKGEREFQMDGPAAIHVSNVRDSFVKSLSQE
FAMSDIVKAKVINTQNMRLSTAEASLGVMRASCSRCRTILEKDESKLKCPSCGYIEKRKL
SSDYGTGIL
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaaaagaaagtgtttttgtcatgcccggtgaccttgtcggtactaccgaagag
ttcactgccggtgaaggcacctacattgatgtgggtgatatacattcaataggtacagga
tatgtgcatattgacaggaactcaagagtgatatccgtgcttcctaaaaccaaaacgcct
ccacagttgaccgaaggggatattgttgttggcagcgttgtgaatatacgtgaatctgtt
gtcttggttgcgattggtgcgatcaggggcaagggggagcgtgagttccagatggatggt
ccggccgctattcatgtttccaatgtgagggattcttttgtcaagagcctttctcaggag
tttgcgatgtctgacatcgtcaaggcaaaggtcatcaatacccagaatatgcgcctgagc
actgctgaagcgtcattgggtgtcatgagggccagctgctccagatgcaggacgatcctt
gagaaggacgaaagtaaactcaaatgcccttcatgtggctatatcgaaaagagaaagttg
tcttccgattacgggaccggaatactctga
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