KEGG   Methanolobus psychrophilus: Mpsy_2112
Entry
Mpsy_2112         CDS       T02280                                 
Name
(GenBank) Exosome subunit Csl4
  KO
K07573  exosome complex component CSL4
Organism
mpy  Methanolobus psychrophilus
Pathway
mpy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mpy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mpsy_2112
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpy03019]
    Mpsy_2112
Messenger RNA biogenesis [BR:mpy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Mpsy_2112
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     Mpsy_2112
SSDB
Motif
Pfam: ECR1_N ECR1_N_2 OB_RRP5_4th HypA EXOSC1 Zn_ribbon_NUD Cas12f1-like_TNB DUF7129 Zn_Tnp_IS91 RUBY_RBDX Spt4 Auto_anti-p27 Zn_ribbon_RPB9 DmmA-like_C Trm112p
Other DBs
NCBI-ProteinID: AFV24316
LinkDB
Position
2046365..2046934
AA seq 189 aa
MDAKESVFVMPGDLVGTTEEFTAGEGTYIDVGDIHSIGTGYVHIDRNSRVISVLPKTKTP
PQLTEGDIVVGSVVNIRESVVLVAIGAIRGKGEREFQMDGPAAIHVSNVRDSFVKSLSQE
FAMSDIVKAKVINTQNMRLSTAEASLGVMRASCSRCRTILEKDESKLKCPSCGYIEKRKL
SSDYGTGIL
NT seq 570 nt   +upstreamnt  +downstreamnt
atggatgcaaaagaaagtgtttttgtcatgcccggtgaccttgtcggtactaccgaagag
ttcactgccggtgaaggcacctacattgatgtgggtgatatacattcaataggtacagga
tatgtgcatattgacaggaactcaagagtgatatccgtgcttcctaaaaccaaaacgcct
ccacagttgaccgaaggggatattgttgttggcagcgttgtgaatatacgtgaatctgtt
gtcttggttgcgattggtgcgatcaggggcaagggggagcgtgagttccagatggatggt
ccggccgctattcatgtttccaatgtgagggattcttttgtcaagagcctttctcaggag
tttgcgatgtctgacatcgtcaaggcaaaggtcatcaatacccagaatatgcgcctgagc
actgctgaagcgtcattgggtgtcatgagggccagctgctccagatgcaggacgatcctt
gagaaggacgaaagtaaactcaaatgcccttcatgtggctatatcgaaaagagaaagttg
tcttccgattacgggaccggaatactctga

DBGET integrated database retrieval system