Methanolobus psychrophilus: Mpsy_2320
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Entry
Mpsy_2320 CDS
T02280
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mpy
Methanolobus psychrophilus
Brite
KEGG Orthology (KO) [BR:
mpy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpy03016
]
Mpsy_2320
Enzymes [BR:
mpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mpsy_2320
Transfer RNA biogenesis [BR:
mpy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mpsy_2320
Prokaryotic type
tRNA splicing ligases
Mpsy_2320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF993
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
AFV24524
LinkDB
All DBs
Position
2238849..2240315
Genome browser
AA seq
488 aa
AA seq
DB search
MSEENESSVFNVLKRISDNIWEVPMDYMPGMRVPGRIFVSEHLLGILEKETIDQVANVAT
LPGILKYSMAMPDAHLGYGFSIGGVAAFDKETGVISPGGVGFDINCGVRLIRTNLSENDV
RPKLSKLVDDLFEAIPTGVGSKSRIRVSDAELDEIFVNGVQWAVDNGYGVKADVDNCESA
GKISGADPSKVSIKARKRGRPQLGTLGSGNHFLEVQYVDKIYDEEAASAFGLREGQIAFM
IHCGSRGAGHQICTDHLQVLTQASKKYNITLPDKQLACAPAQSPEAQDYFKAMLCAANYA
WVNRHVIMHWTREVFEKTFAEEFGDLGMHLVYDVAHNIAKLEEHNVDGKKTEVYVHRKGA
TRAFAPGHPDLPEAYQAIGQPVIIPGSMGTASYVLRSTKESMDISFGSACHGAGRVMSRK
SAKSELHGEQVREELSMKGIQVRASQPSLIAEEAPEVYKSSSEVVDVVHELGIATKVARL
LPMGVIKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaggaaaatgaaagttctgtctttaatgtgcttaaaagaataagcgacaacatc
tgggaagtacctatggactacatgccaggaatgcgtgttcccggaaggatatttgtctct
gagcacctgttaggcatcctggaaaaggaaactatagaccaggtagcaaacgttgcgacg
ctgccgggaatactgaaatattccatggcaatgccggatgcacaccttggttatggcttt
tctataggcggggttgccgcattcgacaaggagaccggggtcatcagtcctgggggagtg
gggtttgatataaactgcggagtgcgcctcatacgcactaatctctcggaaaatgatgtt
cgacctaagctttcaaagcttgtggatgatctctttgaggctattccgacaggcgtaggt
tccaagagccgcatcagggtctctgatgctgaactggatgaaatctttgttaatggagtt
cagtgggcggttgataacgggtacggggtaaaggcagatgttgataattgtgagagcgct
ggaaagatatccggtgctgatccctccaaagtgagtatcaaagcccgcaagcgtggaagg
ccccagcttgggacactgggaagcggcaaccatttcctggaggttcagtatgtggataag
atatatgatgaagaggcagcttctgcttttggtctcagggaaggacagatcgcttttatg
atccattgcggatcacgtggtgccggtcaccagatatgcacagatcatctgcaggtgctg
acacaggcttcaaaaaagtacaatattactctgcctgacaaacagcttgcctgtgccccg
gcacagtctccggaagcccaggattacttcaaggctatgctatgtgccgcaaactacgct
tgggtgaatcggcatgtgatcatgcactggacacgcgaagtttttgaaaagacatttgca
gaagaatttggcgatctgggtatgcaccttgtttatgatgtggcgcacaacattgccaag
cttgaagagcataatgtggacgggaaaaagaccgaggtgtacgtacaccgcaagggcgca
acccgtgcttttgctccggggcatcctgaccttcccgaggcttatcaggccataggccag
cctgtgatcatccccgggagcatgggcacagcttcctatgtgctgcgcagtacaaaagag
tcaatggatatcagttttggaagcgcatgtcatggtgcagggcgtgtcatgagccgcaag
agtgcaaaaagcgagctccatggggagcaggtaagggaagaactgagtatgaaaggcatt
caggtgcgtgcctcgcagccctctcttatagctgaagaggctcccgaggtttacaagtcc
agcagtgaagtagtggacgttgtgcatgagcttggtatcgcaacaaaggttgcgaggctc
ctgccaatgggagtgatcaagggttaa
DBGET
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