Marinitoga piezophila: Marpi_0096
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Entry
Marpi_0096 CDS
T01665
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mpz
Marinitoga piezophila
Pathway
mpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Marpi_0096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpz03021
]
Marpi_0096
03019 Messenger RNA biogenesis [BR:
mpz03019
]
Marpi_0096
Transcription machinery [BR:
mpz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Marpi_0096
Messenger RNA biogenesis [BR:
mpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Marpi_0096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
OB_RNB
AAA_22
NACHT
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AEX84553
UniProt:
H2J335
LinkDB
All DBs
Position
92211..93530
Genome browser
AA seq
439 aa
AA seq
DB search
MSENNKEASKQKDEIIPVEIDMGKLNQMSRRQLYNLARKYGIENYSTLTDHELKFKILSK
QTESFGYFFHEGILEILPDGYGFLRNTHNSLLTGNDDVYVSQSQIRRFNLSTGDVVAGQV
RPPKEGEKFFALLRVEAVNYQDPETAKDRVSFENLTPVYPNERLILEYENGPLSSRIIDI
FSPIGKGQRGLIVAPPKAGKTTLLKDMANSIAKNNPETKRIVLLIDERPEEVTDIRETVD
AEVIAAPFDMDPQNQIKVAEMTLNMAKRLVEFGHDVIILMDSLTRLARAYNLYVPPSGKL
LSGGVDPSALTFPKKFFGAARRIREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELI
LSRELANKRIFPSIDIKLSGTRKEELLFSKEELKYSWILRNWLNNLTKEEAIMEIFRLMR
KYETNKKMFKEIEKQKFIN
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaacaataaagaggcatcaaagcaaaaagatgaaattatccctgtcgaaata
gatatggggaaacttaatcaaatgagccggagacaattatacaatcttgcaagaaaatac
ggaattgaaaattattccactcttacagatcacgaattaaagtttaaaattttgagcaaa
caaacggaatctttcggatatttcttccacgaaggaatccttgaaattcttccagatgga
tatggatttttaagaaatacccataattctttgcttacagggaatgacgatgtatatgtt
tcacaatcgcaaattagaagatttaacctttctacaggtgatgtagttgcaggtcaggtt
aggcctccaaaagaaggagaaaaattctttgcattattacgtgttgaagctgtaaactac
caggatcctgaaacagcaaaagatagggtttcatttgagaatttaacaccagtttatcca
aatgaacgattgatattagaatatgaaaatggtcctttaagttccagaataatagatatt
ttttcaccaattggtaaaggtcaaaggggattaattgttgcaccacctaaggcaggtaaa
acaacattattaaaagatatggctaattcaattgctaaaaataatccggaaaccaaaagg
atagttttattaatagatgagagacctgaagaagtaacagatattagagaaacggttgat
gcagaagtaatagctgcaccttttgatatggatccgcaaaaccaaataaaagttgcagaa
atgacattaaatatggcaaaaaggctcgttgaatttggacatgatgtaataatcttaatg
gattcattaacaagattggccagagcatataatttgtatgttcccccaagcggaaaatta
ttaagcggtggtgttgatccatcggcattaacctttcctaaaaaattctttggagcagct
agaagaattagagaaggcggaagtttaacaataattgcaacggccttagttgaaacaggt
tcaaaaatggatgaggtaatatttgaagaatttaagggaacaggaaatatggaattgatt
ctatcaagagaattagcaaataaacgaatattcccgtctatagacataaagctttcagga
acaagaaaagaagaattattattctcaaaagaagaattaaaatattcatggattttaaga
aattggctaaataaccttactaaagaagaagcaataatggagatattcagattaatgaga
aagtatgaaacaaataaaaaaatgttcaaagaaattgaaaagcaaaaatttataaattag
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