Marinitoga piezophila: Marpi_0731
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Entry
Marpi_0731 CDS
T01665
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpz
Marinitoga piezophila
Pathway
mpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Marpi_0731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpz03400
]
Marpi_0731
Enzymes [BR:
mpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Marpi_0731
DNA repair and recombination proteins [BR:
mpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Marpi_0731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
AAA_30
SLFN-g3_helicase
FCH
Motif
Other DBs
NCBI-ProteinID:
AEX85165
UniProt:
H2J6I0
LinkDB
All DBs
Position
738622..741537
Genome browser
AA seq
971 aa
AA seq
DB search
MIKINNNELLNIIKKSKKQTKIIIFPETWNLENFLFDKNISIYPDYDVFPFESIKPSKKI
LSRRIQTLYNLLKNKDIIILTTLHSLSRYTIPYSILKKNIFSFNIDSTFNINPFYYGYEK
KWNVYEYGEYSKKGFVLDMYIPIYENPIRIELFDDEIVRINYFDINTQKSIESLNSFTFI
PGSEILMKYQENAEKILSKYPNTNNTLEIIDTIPAIYYEKKETLLDYIDIKNSEIFIINE
KESISSSFTRERENLEFIYSDNLKKLYKNYSGDSLENFISKINYKNIEINKQNFIIKKIS
SKKKSKEIPLLEWEDLEIGDLIVHENYGIGIYKGLKKIETQYGKKELIMLEYANNAKVYL
PIERIDKISKYVGDKDIVKLDKIGSSSWERRKKKVEENIRSKIQELIKLYALREHTTGIS
LQGDEEIEEKFKKTFPYIETADQEKAIEEVLNDLASTKPMDRLIAGDAGFGKTEVALRAV
VRTVSSGYQAAILVPTTILAQQYYDNVKYRFDEIGITVELIDRFKTQKEKNIITEKINSG
KLDVIIGTHALLNKNIKFKKLGLLVIDEEQRFGVFQKEKIKELSHGINVLTMSATPIPRT
LYFSISGLRDMSVISTPPIGRLPVETFVSKYSKKIIRTAILREKSRGGQVLYIHNRVNDI
EEVEKELSELIPEVSVVSAHGQMQKRYLSKIIKMYYNGEIDVLIATTIIENGIDIPNANT
LIVDDAERYGISQLYQLRGRVGRSSKRAFAYFLYKNKLKPETEKRLEAIKKIVGPGSGLK
LALQDLEIRGFGDLLGIEQKGHINNIGLNMYKEILNKAIIEIYSKEKIINKENIKEKIDL
DIKGITMPITIPENYIENPIERMRIYRTIANETKIENFEKIKEEIEDKFGKIPEELNNLI
KYSILRINAYKKGAKEIEIYDNTAIIKYSKYLDIDILKLKKYSHHFNHFENKKELVIYTK
NPEESLFKIFE
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
gtgataaaaataaacaacaacgaactcttaaacataataaaaaaatcaaaaaaacagaca
aaaatcataatatttccagaaacatggaacctggaaaatttcctatttgataaaaatata
tctatctatccagattatgatgtatttccatttgaatcaataaaaccctctaaaaaaatc
ctatcaagaagaattcaaacattatataatctattaaaaaataaagatataatcatatta
accacattacattctttaagtagatacaccataccttattctatactgaaaaaaaatata
ttttcatttaacatagattcaaccttcaacataaatccattctattatggctatgaaaaa
aaatggaatgtatatgaatatggcgaatattccaaaaaaggttttgtattggacatgtac
attccaatatatgaaaatccaataagaatagaactatttgatgatgaaattgtaagaata
aattatttcgatataaacactcaaaaaagtatagaatcattaaactcattcacatttata
cctggttcagaaatattaatgaaatatcaggaaaatgcagaaaaaatactttcaaaatat
ccaaacacaaataatacattagaaataatagatacaataccagcaatatattatgaaaaa
aaagaaacattattagattatatagacataaaaaacagtgaaatattcataataaatgaa
aaagaaagtatatcctcatcatttacccgagaaagagaaaaccttgaattcatttattct
gataatctaaaaaaattgtacaaaaattattctggagattctcttgaaaattttatctca
aaaataaattataaaaacatagaaataaataaacaaaatttcataataaaaaaaatatcc
tcaaaaaagaaaagtaaagaaattccattattagaatgggaagacttagaaattggagat
ttaatagttcatgaaaactatggaataggtatatataaaggattaaaaaaaatagaaact
caatacggaaaaaaagaactaataatgcttgaatatgccaacaatgcaaaagtatatctt
ccaatagaaagaatagataaaatttcaaaatacgttggagataaagacatagtaaaactt
gataaaatcggctcatcatcatgggaaagacgaaaaaagaaagtagaagaaaatatacgt
tcaaaaatccaagaactaataaaactatatgctttaagagaacatacaacaggtatatca
ttacagggtgatgaagaaatagaagaaaaattcaaaaaaacattcccatacatagaaaca
gcagatcaggaaaaagctattgaagaagtattaaacgatttagcttcaacaaaaccaatg
gaccgtctaattgctggagatgctggatttggaaaaacagaagttgcattaagagctgta
gtaagaactgtaagttctggatatcaggcagcaatactcgttccaacaacaatacttgct
caacaatactatgataatgtaaaatatagatttgatgaaattggaataacagtagaatta
atcgacagattcaaaactcaaaaagaaaaaaacataataacagaaaaaataaactccgga
aaattagatgtaataataggtactcatgcactattaaacaaaaatataaaattcaaaaaa
cttggattacttgtcatagatgaagaacaacgatttggagtattccaaaaagaaaaaata
aaagaattatctcatggaataaacgtattaacaatgagtgcaaccccaattccaagaaca
ttatacttctcaatctccggtttaagagatatgtctgtaatatccacaccgccaattgga
cgattaccagtagaaacctttgtatcaaaatactcaaaaaaaataattagaacagctata
ttaagggaaaaatcaagaggcggtcaggtattatatattcataatagagttaatgatatt
gaagaggtagaaaaagaattatcagaattaattcccgaagtttctgtagtatcagcacat
ggtcaaatgcaaaaacgttatctttcaaaaataataaaaatgtattataatggcgaaata
gacgtattaattgcaacaacaataatagaaaatggaatagacataccaaacgcgaacaca
ttaatagttgacgatgcggagcggtacggaatatcccaattataccaattacgaggaagg
gtaggtcgttcctcaaaacgtgcatttgcatatttcctttacaaaaacaaattaaaacca
gaaacagaaaaaagattagaagcaataaaaaaaatagtaggtcctggaagcggtttaaaa
cttgcattacaggatttagaaataagaggatttggagatttacttggaatagaacaaaaa
ggacatataaacaacattggtttaaacatgtacaaagaaattctaaataaagccataata
gaaatatattcaaaagagaaaataataaacaaagaaaatatcaaagaaaaaatagacctt
gacataaaagggataaccatgcccattacaattccagaaaattatatagaaaacccaata
gaaagaatgagaatctacagaacaattgcaaatgaaacaaaaatagaaaactttgaaaaa
ataaaagaagaaatagaagataaatttggaaaaatacctgaagaacttaacaatctaata
aaatatagtatattaagaataaacgcatataaaaaaggcgcaaaagaaatagaaatatat
gacaatacagctataataaaatactcaaaatatttagatatagatatattaaaactcaaa
aaatactcacaccacttcaatcattttgaaaacaaaaaagaattagtaatatatacaaaa
aatccagaagaatcgttatttaaaatatttgaataa
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