Marinitoga piezophila: Marpi_1304
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Entry
Marpi_1304 CDS
T01665
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mpz
Marinitoga piezophila
Brite
KEGG Orthology (KO) [BR:
mpz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpz03016
]
Marpi_1304
Enzymes [BR:
mpz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Marpi_1304
Transfer RNA biogenesis [BR:
mpz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Marpi_1304
Prokaryotic type
tRNA splicing ligases
Marpi_1304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEX85707
UniProt:
H2J316
LinkDB
All DBs
Position
1350680..1352059
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AA seq
459 aa
AA seq
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MDIIRENKYMWKVEKFKNMKVPVYVLTDSQTIRSQEYHEAIMQLVNVATLPGIVKGSFGM
PDIHWGYGFPIGGVAAFDADSGIISPGGVGFDINCGVRIMTTSLEFSEIKDYIDEILTRV
YNEIPVGVGSRTNFKLSVKEMKKILNNGVYWAINNNYGLAEDLYNIEDSGKIKYADADFV
SDEAIKRGADELGTLGSGNHFIEIQIVEKVFEKENAERYGLFEGQIVYMIHSGSRGLGHQ
VATDYIKIFRDNLKDWNKKIPDKQLINAPFKSKYGQEYFSAMNAAANFAFVNRQIMGHKI
RNIFKDLFDVESKLLYDITHNIAKLEKHNVDGEEKDLIVHRKGATRAFPDQIVLIPGSMG
SSSYILLGTEKSMSIAFGSSAHGAGRVLGRRQAKRRLNYKNVLNSMKEKKIKIISKSKNT
IVEEAPEVYKDVDSVVDIIEKIGISRKIAKLTPVGVVKG
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggatattataagagaaaataaatatatgtggaaagttgaaaaatttaaaaatatgaaa
gttcctgtttatgttttaaccgattcccaaactattcgtagccaggaatatcatgaagct
attatgcaattggttaatgttgctacattaccagggattgtgaaaggttcttttggtatg
ccagatatacattggggttatggttttccaataggtggtgtcgcagcatttgatgctgat
agtggtattatttctcctggcggagttggatttgatattaattgtggtgttagaataatg
actacctctctcgaattttcagagataaaagattatatagatgagatactaaccagagtt
tataatgaaattcctgttggcgtcggctccagaacgaattttaaattgtctgtaaaggaa
atgaagaaaatcctgaacaatggtgtatattgggcaataaataataattacggtttggca
gaagatttgtataatattgaagatagcggtaaaattaagtacgcagatgcggattttgtt
agtgatgaagcgataaaaagaggagcagatgaattagggactcttggatctggaaatcat
tttattgaaatccagattgttgaaaaggttttcgagaaagaaaatgctgaaagatacggt
ctttttgaaggtcaaattgtatatatgattcattcaggttcaagaggtcttggacatcag
gttgcaacagattatataaaaattttcagagataatttaaaagattggaataaaaaaatt
ccagataaacagttaataaatgctccttttaaaagcaaatatggtcaggaatatttttct
gcaatgaatgctgctgccaattttgcttttgttaatagacagataatgggacataaaata
agaaatatttttaaggatttatttgatgttgaatctaaattgttatatgatattacgcat
aatatagcaaaattggaaaagcataatgttgatggtgaagagaaagatttaattgttcac
agaaagggtgctacaagagcgtttccggaccaaatagtgttgattcctggaagcatggga
agttcttcatatattttgctgggtacagagaaatctatgagtattgcatttggctcatct
gctcatggagcagggagagttttaggtagaagacaggctaaaagaagattaaattataaa
aatgttttaaattcaatgaaagaaaaaaagataaagataatttcaaaatcaaaaaatacc
attgttgaggaagcaccagaagtgtataaagatgtagattctgttgttgatattatagaa
aaaattggaatatccagaaagattgcaaagttaacccccgttggagttgtaaagggttaa
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