Marinitoga piezophila: Marpi_1839
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Entry
Marpi_1839 CDS
T01665
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mpz
Marinitoga piezophila
Pathway
mpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Marpi_1839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpz03019
]
Marpi_1839
03009 Ribosome biogenesis [BR:
mpz03009
]
Marpi_1839
Enzymes [BR:
mpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Marpi_1839
Messenger RNA biogenesis [BR:
mpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Marpi_1839
Ribosome biogenesis [BR:
mpz03009
]
Prokaryotic type
rRNA helicases
Marpi_1839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_C_2
CobA_CobO_BtuR
Cas3-like_C_2
Flavi_DEAD
Helicase_RecD
NDK
Motif
Other DBs
NCBI-ProteinID:
AEX86220
UniProt:
H2J601
LinkDB
All DBs
Position
1914120..1915721
Genome browser
AA seq
533 aa
AA seq
DB search
MEKLVKFEDLGLSESTLKALKKKGFEEPTPIQEKVIPILLQEGIDVIGQAQTGTGKTAAF
GLPLIEKLEPSKKVKALILTPTRELAIQVAEEINSLKGRKKLNILPIYGGQSIENQISRL
KKGIDIVVGTPGRILDHIRRKTLDLKHVSYVILDEADEMLDMGFIDDVEEILSNTPEKKQ
ILLFSATMPSRILKLAKKYMSNYKIISVKPEQLTTELTEQIYFEVNESDKFEALCRIIDI
EPEFYGLVFCRTKVDVDTVSNRLIDRGYSAEALHGDLSQYQRERILRKFKTKRANILVAT
DVAARGIDISDLTHVINYSLPQNPESYVHRIGRTGRAGKEGTAITFVTPEEYRKLLFIKR
ISKSDIKKKRIPKIKDVIESKKNRIKTEINNILESETYENYLELANEMLENRNANEVLAA
VLKYAFQDELDERNYNEIREVKGKSFVDKKGKTRLFVALGKDDGITKEKILKLIKDYTKL
DNVRLRDVRILDKFSFITVSFEDAEIILESFKKKRRGRKPIIAKAKEKSRKAE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctagtaaagtttgaggatttaggattatcagaaagtacattaaaggcgtta
aagaaaaaggggtttgaggaaccaacaccaattcaggaaaaggttataccaattctttta
caggaaggtattgatgtaattggtcaggcgcagactggaacaggtaaaacagcagcattt
ggattaccgttaattgaaaaattagaaccttcaaaaaaggtaaaggctttaattttaact
cctacaagggaattggctattcaggttgcagaggagattaattctttaaaaggaagaaaa
aagttaaatattcttcctatttatggtggacaatcaatagaaaaccaaatttcaagactt
aaaaaaggtattgatatcgtagttggaacaccgggaagaatattggatcatattagaaga
aaaacattggatttaaaacatgtttcttatgtaattcttgatgaagcagatgagatgctt
gatatgggatttatagatgatgtagaggaaatactttcaaatacaccagaaaaaaagcaa
atacttttattctcagctacaatgccatcaagaattttaaagcttgcaaaaaaatatatg
agcaattacaagataatttctgtaaaaccagaacaattaacaacggaattaacagagcag
atatattttgaggttaatgaatcagataaatttgaggcgttatgtagaattatagatata
gaaccagagttttacggtcttgtattctgtagaacaaaggtagatgttgatactgtttca
aacagacttattgataggggatatagtgcagaggcattacatggagatttatcccaatat
caaagagaaagaattttaaggaaattcaaaacaaagagagcaaatattcttgtagcaaca
gatgttgcagcaagaggtattgatatttcagatttgacacatgtaataaattattcattg
cctcaaaatcctgaatcgtatgttcatagaattggaagaacaggaagggcaggaaaagaa
ggaacagctattacttttgttacaccagaagaatatagaaagttattgtttataaaaaga
atttcaaaaagcgatataaagaaaaagagaattcctaaaataaaggatgttatagaatca
aagaaaaatagaataaaaacagaaataaataatatccttgaaagcgaaacatatgaaaac
tatcttgaattagcaaatgaaatgctcgaaaatagaaatgcaaatgaagtacttgcagca
gtattaaaatatgcttttcaggatgaacttgatgaaagaaattataatgaaattagagaa
gttaaaggaaaatcatttgttgataagaaaggtaaaacaagattatttgtagcccttggt
aaagatgacggaatcacaaaggaaaaaatattaaaattaataaaagattatacaaaactt
gataatgttagattaagagatgtaaggatactcgataaattttcttttattactgtgtct
tttgaagatgcagagattatacttgaatcttttaaaaagaaaagaagaggaagaaaacca
ataattgcgaaagcaaaagaaaaaagcagaaaggcggaataa
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