Mumia qirimensis: AB3M34_08680
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Entry
AB3M34_08680 CDS
T10923
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mqr Mumia qirimensis
Pathway
mqr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mqr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AB3M34_08680 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mqr03400
]
AB3M34_08680 (ligD)
Enzymes [BR:
mqr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AB3M34_08680 (ligD)
DNA repair and recombination proteins [BR:
mqr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AB3M34_08680 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
XEK81677
LinkDB
All DBs
Position
complement(1792692..1793579)
Genome browser
AA seq
295 aa
AA seq
DB search
MASSTLDVDGRSLKVSNLDKVLYPDEGTTKFDVIHYVLSVAEPLLKQLADRPCTRKRWPD
GVEKDPFFEKNVPRGTPDWVRTVEVATPGSSTGRDSLVFPIAEHRSDLVWLANLAALELH
TPQWTVGPRGGVRDADRLVIDLDPGEPAGLEEAVAIGQLVRERLDADGWRTVPVTSGSKG
LHLYASHGGETSPDALRDYARGIADELSGQHPDRVLSAMRRADRRGKVFLDWSQNVRAKT
TVTPYSLRGRSRPWVAAPRTWDELEDPSSVRQVLLGEMGGRLERFGDPMTALDAD
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgagcactctggacgtggacggacggtccctcaaggtcagcaacctcgacaag
gtgctctatcccgacgaagggaccaccaagttcgacgtcatccactacgtcctctccgtc
gcggagccgctgctgaagcagctcgccgaccggccctgcacgcgcaagcgctggccggac
ggtgtcgagaaggacccgttcttcgagaagaacgtcccccgcggcacgcccgactgggtg
cgcaccgtcgaggtggcgacaccgggaagctcgacgggccgggactcgctggtgttcccg
atcgccgagcaccgctccgacctcgtgtggctcgcgaacctcgccgcgctcgagctccac
accccgcagtggaccgtcgggcctcgcggcggagtacgcgatgccgaccgcctcgtgatc
gacctcgaccccggtgagcccgccggcctcgaggaggcggtggccatcgggcagctggtc
cgcgagcgcctcgacgccgacgggtggcggacggtcccggtgaccagcgggagcaagggc
ctgcacctgtacgcgtcacacggaggagagacctcgcccgacgcgctgcgcgactacgcc
cgcgggatcgccgacgagctgtccggccagcaccccgaccgcgtgctgtcggccatgcgt
cgcgccgatcgacggggcaaggtattcctcgactggagccagaacgtccgcgcgaagacc
acggtcacgccgtactcgctgcgcggacgctcacggccgtgggtcgccgcgccgcgcacc
tgggacgagctcgaggacccgtcgagcgtccgtcaggtgctcctcggcgagatgggcgga
cggctggagcggttcggcgacccgatgaccgcgctcgacgccgactga
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