Mumia qirimensis: AB3M34_11740
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Entry
AB3M34_11740 CDS
T10923
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mqr Mumia qirimensis
Brite
KEGG Orthology (KO) [BR:
mqr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mqr03019
]
AB3M34_11740 (hrpA)
Enzymes [BR:
mqr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB3M34_11740 (hrpA)
Messenger RNA biogenesis [BR:
mqr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB3M34_11740 (hrpA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
APHB_HrpA
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
nSTAND3
T2SSE
nSTAND_NTPase5
ABC_tran
AAA_30
NACHT
AAA_25
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
XEK78026
LinkDB
All DBs
Position
2418639..2422505
Genome browser
AA seq
1288 aa
AA seq
DB search
MTVGELRTRLREVTLRDERRLRRSLDRAASQRDADRRSHQLADVEKQVAAAERRVASRTA
AVPALEYPPELPVSDRRDDIAAALDEHQVIVVAGETGSGKTTQLPKIALGLGRGVRGTIA
HTQPRRIAARSVAARVAEETKTTLGETVGYAVRFDDRSGPDTLVRVMTDGVLLAEIHDDP
LLLRYDTVIVDEAHERSLTIDFLLGYLRRLLPRRPDLKVVITSATIDPQRFAAHFADAAG
NPAPIIEVSGRTYPVEIRYRPLAEREDGDVLAAIGDAVDELGRESDGDVLVFLSGEREIR
DTADMLRDRKMRRTEILPLYGRLSAAEQHKVFEAHTGRRIVLATNVAETSLTVPGIRYVV
DPGTARISRYSQRLKVQRLPIEPISQASANQRAGRSGRTSDGICIRLYAEDDYEGRPEFT
DPEILRTNLASVMLQMASLDLGPVEDFPFLDPPDQRAVRDGVGLLEELGALTAGAKGMRS
SLTEVGRQVAAFPLDPRLARMLVAASTYGVLREMLVIVSALSIQDPRERPLEAQQQADAK
HARFTDPTSDFLAYLNLWNYLREQRRELSGNAFRRTVREDYLHFLRIREWQDVHAMLRDQ
CKGMKLDLNSTPADPDRIHSAALTGLLSHIGLREGETRDYLGARGARFAIFPGSGLAKKP
PQWVVAAELVETSRLWARTAAKVEPAWIEQEAAHLLKRSYSEPHWSRRRGAVMAHERVTL
YGVPVVADRLVSYGKVDVEVARELFIRHALVQGEWSTHHPFWRRNAEVIAEIEGLEDKVR
RRDIRVDDEVLFAFYDERVGPDVVSVRHFDSWWKKARHRKPDLLDLTPEDLVRDDAGDVA
LEAYPTTWESAGLDLPLSYAFEPDSDVDGVTVDVPLERLADLDETAFLWGVPGYRQELVT
ALLRGLPKQVRRQFVPAPDVARRLMALPLNTAKPVTEAMSDGLRTLTGDVVKPETFDLST
VPKHLRVTFRVLDGDTEVSRGKDLDRLRAELRPRLRQTIAAASSSIERDGIMTWDLGTIP
TQVTSMSRGHEVTAYPALVDRVTHVDLRVFASPLHAEIASREGVRRLLALNVASPAAQVS
RDLGTRALLVLAGAPYASTSLLMLDSVLAGIDAVTGRAVVRDEDTFVQLREKVRAELYAQ
TLAVAREVERVIADVGSLRGDLDRYRGSKPEIVRDIEVQMSWLVYDGFVSETGLDQLKHL
PRYVRAAAHRLQHGDDRAEAEQRHTVQDLEARFYEAVEALPDIERRSDAVDAARWALEEL
RVGTFAQRLRTAVPVSPKRVTKLIDAIS
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcggtgagctgcgtacgcgcttgcgcgaggtgacgctgcgcgacgagcgccgc
ctgcgccgcagcctcgaccgcgcggcgtcgcagcgcgacgcagatcgccgcagccaccag
ctggccgacgtcgagaagcaggtcgcggccgccgagcgccgggtcgcgtcccgtacggcg
gcggtgccggcgctcgagtacccgccggagctgcccgtctcggaccgacgcgacgacatc
gctgcagcgctcgacgagcaccaggtgatcgtggtcgccggcgagaccggctccggcaag
acgacgcagctgccgaagatcgcgctcggcctcggtcgcggcgtccgcggcacgatcgcc
cacacgcagccgcgtcgcatcgccgcccgcagcgtcgccgcccgcgtggccgaggagacc
aagacgacgctcggcgagacggtcggctacgccgtgcgcttcgacgaccgctctggtccg
gacacgctcgtccgcgtgatgaccgacggcgtgctgctcgccgagatccacgacgacccg
ctgctgctgcgctacgacaccgtgatcgtcgacgaggcccacgagcgctccctgacgatc
gacttcctgctcggctacctccgccggctcctcccccgtcgtcccgacctgaaggtcgtc
atcacgtcggcgaccatcgacccgcagcgcttcgccgcccatttcgccgacgcggccggc
aaccccgccccgatcatcgaggtcagcgggcggacgtacccggtggagatccgctaccgc
cccctcgcggagcgcgaggacggcgacgtcctcgccgcgatcggcgacgccgtggacgag
ctgggccgcgagtcggacggggacgtcctggtcttcctctccggcgagcgcgagatccgc
gacaccgccgacatgctgcgcgaccgcaagatgcgccggaccgagatcctccccctgtac
ggccggctgtccgcggctgagcagcacaaggtcttcgaggcgcacaccggtcgccggatc
gtcctcgccaccaacgtcgccgagacgtcgttgaccgtgccgggcatccgttacgtcgtg
gaccccggcacggcacgcatctcgcgctacagccagcggctgaaggtgcagcgcctcccc
atcgagccgatctcgcaggcgagtgcgaaccagcgtgccgggcggtcgggtcgtacgtcg
gacggcatctgcatccgcctctacgccgaggacgactacgagggccgcccggagttcacc
gacccggagatcctgcggacgaacctcgcgtcggtcatgctccagatggcgtctctggac
ctgggcccggtcgaagacttcccgttcctcgacccaccggaccagcgggccgtccgtgac
ggggtcggtcttctcgaggagctcggcgcgctcaccgccggcgcgaaggggatgcggagc
tcgctcaccgaggtcgggcggcaggtggcggccttccccctcgacccgcgcctcgcccgg
atgctcgtcgccgcgtccacctacggcgtcctgcgcgagatgctggtgatcgtctcggcg
ttgtcgatccaggacccccgcgagcgcccgctcgaggcgcagcagcaggccgacgcgaag
cacgcccgcttcacggacccgacctcggacttcctcgcgtatctcaacctgtggaactac
ctccgcgagcagcgccgtgagctgtccggcaacgcttttcgcaggacggtccgcgaggac
tacctgcacttcttgcggatccgcgagtggcaggacgtccacgcgatgctgcgcgaccag
tgcaagggcatgaagctggacctcaacagcacgcccgccgatcccgaccgtatccactcg
gccgccctgaccgggctcctgtcccacatcggactgcgcgagggcgagacgcgtgactac
ctcggtgcgcgcggcgcccggttcgcgatctttccaggctcgggcctcgccaagaaaccg
ccgcagtgggtcgtcgccgccgagctggtagagacctcgcgtctgtgggcgcgcaccgcg
gcgaaggtcgagccggcgtggatcgagcaggaggcggcccacctgctcaagcgctcctac
tctgagccgcactggtcacgtcgccgtggcgcggtgatggcgcacgagcgcgtcacgctg
tacggcgtacccgtcgtcgccgaccgcctcgtctcctacggcaaggtcgacgtcgaggtg
gcgcgtgagctcttcatccgccatgcgctcgtgcagggcgagtggagcacccaccacccg
ttctggcgacgcaacgccgaggtcatcgccgagatcgaagggctcgaggacaaggtcagg
cgccgcgacatccgcgtggacgacgaggtgctcttcgcgttctacgacgagcgcgtcgga
cccgacgtggtctccgtgcgccacttcgactcctggtggaagaaggcgcgccaccgcaag
cccgacctgctcgacctcacgccggaggatctggtccgcgacgatgcaggcgacgtcgct
ctggaggcctacccgacgacctgggagtccgccggtctcgacctcccgctctcgtacgcg
ttcgagcccgacagcgacgtcgacggcgtcacggtcgacgtgcctctggaacggctcgcg
gacctcgacgagactgccttcctgtggggtgtcccgggctaccggcaggagctggtgacc
gcgcttctgcgcggcctgcccaagcaggtacggcgccagttcgtacccgcacccgacgtc
gcgcgtcgtctgatggccctgcccttgaacaccgccaaaccggtcaccgaggccatgtct
gatggtcttcggacactgaccggtgacgtcgtgaagcccgagaccttcgacctcagcacc
gtgcccaagcatctgcgcgtgacgttccgcgtgctcgacggcgacaccgaggtgtcccgc
ggcaaggacctcgaccgtctccgcgccgagctgcgcccccgcctccggcagacgatcgcg
gccgcgtcgagcagcatcgagcgcgacgggatcatgacctgggacctcggcacgatcccg
acgcaggtcacgtcgatgagccgcggccacgaggtcacggcgtacccggcgctcgtcgac
cgtgtcacccacgtcgatctccgcgtcttcgcttctcccctgcacgccgagatcgcctcg
cgcgagggcgtacgccgcctgctggcgctcaacgtcgcctcacccgccgcacaggtgtcg
cgcgacctcggcacccgcgctctgctggtcctcgccggtgcgccgtacgcgagcacctcg
ctgctcatgctggacagcgtcctcgccggcatcgacgcggtgaccggccgcgccgtcgtc
cgcgacgaggacacgttcgtgcagttgcgcgagaaggtccgcgccgagctgtacgcgcag
acactcgccgtcgcccgcgaggtcgagcgcgtgatcgccgacgtcggcagcctccgcggc
gacctcgaccgctatcgcgggagcaagccggagatcgtgcgcgacatcgaggtgcagatg
tcgtggctcgtctacgacggattcgtctccgagacgggcctcgaccagctgaagcacctc
ccccggtacgtccgcgctgccgcgcaccgtctccagcacggcgacgaccgggcggaggcg
gagcagcgccacaccgtccaggacctggaagccaggttctacgaggcggtcgaggccctc
cccgacatcgagcgtcgctcggacgccgtcgacgcggcgcgctgggcgctcgaggagctc
cgcgtcggcaccttcgcgcaacggctgcgtacggccgtgcccgtctcacccaagcgcgtg
acgaagctgatcgacgcgatcagctga
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