Meiothermus ruber DSM 1279: Mrub_1621
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Entry
Mrub_1621 CDS
T01193
Name
(GenBank) transcription factor CarD
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mrb
Meiothermus ruber DSM 1279
Pathway
mrb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mrub_1621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrb03400
]
Mrub_1621
Enzymes [BR:
mrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mrub_1621
DNA repair and recombination proteins [BR:
mrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mrub_1621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
TRCF
Helicase_C
ResIII
UvrB_inter
Cas3-like_C_2
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADD28383
UniProt:
D3PSF0
LinkDB
All DBs
Position
complement(1647898..1650861)
Genome browser
AA seq
987 aa
AA seq
DB search
MNLTEPSVLNHYLPGLPQVARALIFAQHHGPRVLLCPEERLGLYADLSALGVSSYVNPGL
EAIGEAEVVVMSYREALEGFPARPEDWRLVLEVGRRYLRDELLERLLRMGYLREEDYRVQ
GDVLELGEVRLEFFGDELEVLKVDGQPRQRHVLTARAGKAEAWDSHKILHFPGPVFLDTP
ALAPEALWPLLAGRDRVAFGLGGPELPTLSLDYKPLPPYRARISQFVEDVHNWVGAGWSV
VFFYRHVKSRNYLLSKLQARYPDLAVVSTPTLGPRPGSLNLVPASFEGAFLEPQSRTVYL
SEAHLYAFGGAEVLRSRKLLSAEETDPGALAVGDYLIHPEHGIGQYLGLETREVLGAQRD
YLVLRYAGEARMYLPVEQLPLLKRHPGTTDDPPALSSLGKGEWKRSREKAAKDAEELAQR
LLVLHAKREATPGRAFGPLPEWDVLIEQNFPFELTPDQRKALEETLRDLEAPRPMERLIS
GDVGFGKTEVALRAAFRVVGHGAQVAVLVPTTLLAEQHKETFQKRLEGLPVRVAALSRFT
SERETREVLRGLEQGTVDIVIGTHRLLSPDVRFKDLGLLVVDEEHRFGVGQKERIRELKE
AVDTLYLSATPIPRSLYSALVGLRDLSSIQTPPPGRKPIRTLLAPYDPALVRQGIMDELE
RGGKAFYVHDRVATILARRRYLEALVPEARFGVVHGQMPEAEVEETMLAFAEGAFDVLLA
TTIIESGLDIPEANTILVERADKLGLAALYQLRGRVGRRDQEAWAYLFHPLRLTEGAERR
LAAIADLSDLGSGHLLAEKDMEIRGVGNLLGPEQHGHIRAVSLEIYTELLSEAIRKLKGE
QTEPERHVTLDLQLSARLSPEYIQSPAARSRYYGRLAECKNLAQLARLVKELKERYGPAP
QEVENFLALTRLRLLAEGRGVVSITEDMLHLQIAFQTSALDYDAKALRALPFRVEPTQYP
PGFRIPKKGLRPEEYVQALSEVLYLVG
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttaccgagccctctgtcctgaaccactacctgcccggcctgccccaggtggcc
cgcgcgctgatctttgcccagcatcatggcccccgggtgctgctctgccccgaggagcgg
ctggggttgtacgccgatctgagcgcgctgggggtctcgtcctatgtgaaccctggtctg
gaggccatcggcgaggccgaggtggtggtgatgagctaccgcgaggccctcgagggcttt
ccggcccggcccgaagactggcggttggtgctcgaggtgggccgccgctacctgcgcgac
gaactattggaacggcttttgcgcatgggctacctgcgcgaagaggactatcgggtgcag
ggggacgtcctcgagctgggcgaggtgcgcctcgagttctttggcgacgagctcgaggtg
ctcaaggtggacggccagccccgccagcgccacgtcctgacggcccgcgcaggcaaggcc
gaggcctgggactcccacaagattctgcacttccccggcccggtcttcctcgacaccccg
gccctggccccggaggcgctgtggcctttgctggccgggcgggatcgggtggcctttggc
ctgggagggcccgaactgcccaccctgtccctggactacaagcccctgcccccctaccgg
gcccgcatctcccagtttgtcgaggatgtgcataactgggtgggggcgggctggtcggtg
gtgttcttttatcgccacgtcaagagccgaaactacctgctctccaagcttcaggcccgg
taccccgacctggccgtggtctccacccccaccctgggcccccggcccggcagcctcaac
ctggtaccggcctccttcgaaggggctttcctcgagccccaaagccgcaccgtctacctg
agcgaggcccacctgtacgccttcggtggggccgaggtgctgcgcagccgcaagctgctc
tctgccgaagagaccgaccccggcgccctggccgtgggcgactacctgatccaccccgag
cacggcatcggccagtacctgggcctggagacccgcgaggtgctgggggcccagcgcgac
tacctggtgctgcgctacgccggtgaggcccgcatgtacctgccggtcgagcaactcccg
ctcctgaagcgccaccctggcaccaccgacgaccccccggcgctttcctcgctgggcaag
ggcgagtggaagcggagccgcgagaaagctgccaaagatgcggaagaactggcccagcgc
ctgctggtgctgcacgccaagcgcgaggccacgccgggccgggcttttgggccgctgcct
gagtgggacgttctgattgagcaaaactttcccttcgagctcacccccgaccagcggaag
gccctcgaggagaccctgcgcgacctagaggccccccggcccatggaacgcctgatctca
ggcgacgtgggcttcggtaagaccgaggtggccttgcgggcggccttccgggtggtgggg
catggggcccaggtggcggtgctggtgcccaccaccctcttggccgagcagcacaaggag
acctttcagaagcgtctggagggcctgccggtgcgggtggcggcgctatcgcgcttcacc
tcggagcgggagacccgcgaggtgctgcggggcctcgagcagggcacagtagacatcgtg
atcggcacccaccgcctgctctcgcccgacgtgcgcttcaaggacctgggcctactggta
gtggacgaggagcaccgcttcggggtggggcagaaggagcgcatccgcgaactcaaagag
gccgtggacaccctctacctctcggccacccccatcccccgcagcctctacagcgccctg
gtgggcctgcgcgacctcagcagcatccagaccccgccccccggccgcaagcccatccgc
accctgctggccccctacgatccggccctggtgcggcagggcatcatggacgagctcgag
cgcggcggcaaagccttctacgtgcacgaccgggtcgccaccatcctggcccggcgccgc
tacctggaagccctggtgcccgaggcccgttttggggtggtgcacgggcagatgcccgag
gccgaggtggaggagaccatgctggccttcgccgagggggctttcgatgtacttctagcc
accaccatcatcgagtccggcctcgacatccccgaggccaacaccatcctggtcgagcgg
gccgataagctgggcctggccgcgctgtaccagctccggggccgggtggggcggcgcgac
caggaggcctgggcctacctcttccaccccctgcgcctcaccgaaggggccgaacgccgc
ctggccgccatcgccgacctttccgacctgggctccggccacctgctggccgaaaaggat
atggaaatccgcggggtgggcaacctgctgggccccgagcagcacggccacatccgcgcg
gtgagcctggaaatctacaccgagctgctctccgaggccatccgcaagctaaagggcgaa
caaaccgaacctgagcgccacgtgaccctcgaccttcagctctcggcccggctctccccg
gagtacatccagagccccgcggcccgcagccgctactatggccgcctggccgagtgcaaa
aacctggcccagctcgcccgcctggtcaaagaactcaaggagcgctacggcccggccccc
caggaggtggagaacttcctggccctcacccgcctgcgcctgctggccgagggccggggg
gtggtctccatcaccgaggacatgctgcacctgcaaatcgccttccagacttccgccctc
gactacgacgccaaagccctgcgggccctgcccttccgggtcgagcccacccagtacccc
cccggcttccgcatccccaaaaaaggcctgcggcccgaggagtatgtgcaggccctgagc
gaggtgctgtacctggtgggttga
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