Methylobacterium radiotolerans: Mrad2831_1647
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Entry
Mrad2831_1647 CDS
T00674
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mrd
Methylobacterium radiotolerans
Pathway
mrd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mrad2831_1647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrd03400
]
Mrad2831_1647
Enzymes [BR:
mrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mrad2831_1647
DNA repair and recombination proteins [BR:
mrd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mrad2831_1647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_16
SecA_DEAD
MFD_D3
RecG_dom3_C
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACB23642
UniProt:
B1M6I2
LinkDB
All DBs
Position
1755050..1758646
Genome browser
AA seq
1198 aa
AA seq
DB search
MAKPQPKPPAPAAKPPVARFALPKSSALARAIDALKRGDSPVLANAPEGFDALALADLAR
ALAPTVDAPAVLVHVARDSGRSAAFQAALGFVAPEMDVMSLPAWDCQPYDRVSPTTAVAA
ARMTALARLARTRSAEDRPRILCTTVNALVQRVPPRAHIAKEAFSAAIGNVVAMDDVVAW
VEANGFLRTGTVRDTGEYAVRGGILDLSPPGLPAPIRLDFFGDTLESIRAFDPETQRTTG
QLRSLDLMPMSEVQLTTETIRRFRQNYIQSFGAATRDDRLYETVSEGRRYAGLEHWMPLF
YDHLDTLFDYLGGVPLVFDPQVEDAAAERISLVQDYYQAREGAMKTPQPGVAPYKPLPPR
ALYLTPNELKERIATATVARLTPFAQPESPERAVIDCGAKAGRSFAPERADETASVFDAA
VAHIRDLQGSGHHVILGAWSDGSRDRLCGVLTDHGLRKPVAITRLTDVYALKRGTDAAVA
VWGLEAGFTAGELAVVSEGDILGDRLVRQKRKAKRPQDVILEVQALQPGDLVVHADHGIG
RFVGLKTIHAAGAPHDCLELQYTGGLLLLPVENIELLTRYGSEDSEVALDRLGGGAWQAR
KAKMKRRILEMAGELIKVAAQRFVRKAPALQAPEGLYGEFAARFPFEETEDQANAIDAVL
DDLNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVIVPTTLLARQHYRTFAERF
KGLPVQVAQLSRFASAAEMKQTRAGLAAGTVDIVVGTHALLAKNIAFKDLGLIIVDEEQH
FGVAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLVVRTFVTPF
DPLTIREALLRERYRGGQSFYVVPRIEDLAEVKKFLDAEMPEIKVAVAHGQMAAGQLEDV
MTAFYEGKFDVLLSTTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKARAYAL
FTTPANRQLTAQAEQRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHIKEVGYE
LYQQMLEDAVTALKAGIEDVPEEAWSPTIALGAPVTIPEDYVEDLGVRLALYRRLATIQD
DAEMESFGAELIDRFGPLPPEVEQLLKIGTIKILCLKANVEKVEAGPKGVVVHFRDRSYA
NPQGLVAYVAEQASFAKVRPDMSVVFVRELTTVPARLKTATEVLRSLVTIAGRGKKAA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcctcagccgaagccccccgcccccgccgccaagccgccggtcgcgcgcttc
gcgctgccgaaatcctccgcgctcgcccgggcgatcgacgccctcaagcgcggcgacagc
ccggtcctggcgaacgccccggagggcttcgacgcgctggcgctcgccgacctcgcccgt
gccctggcgcccaccgtcgacgcaccggccgtgctggtgcacgtggcgcgcgattccggg
cgctcggccgcgttccaggcggctttgggcttcgtcgcgcccgagatggacgtgatgagc
ctgccggcctgggactgccagccctacgaccgggtctcgccgaccaccgccgtcgccgcc
gcccggatgacggcgctcgcccgcctcgcccgcacccgctcggccgaggacaggccgcgc
atcctctgcaccaccgtcaacgccctggtgcagcgggtcccaccccgcgcccacatcgcc
aaggaggcgttctcggcggcgatcggcaacgtcgtggcaatggacgacgtggtggcctgg
gtcgaggccaacggcttcctgcgcaccgggacggtgcgcgacaccggcgagtacgcggtc
cgcggcggcatcctcgacctgtcgcccccgggcctgccggccccgatccgcctcgacttc
ttcggcgacacgctggaatcgatccgcgccttcgacccggagacgcagcgcaccaccggt
cagctccgctccctcgacctgatgccgatgagcgaggtccagctcaccaccgagacgatc
cggcgcttccgccagaactacatccagagcttcggcgcggcgacccgggatgaccggctc
tacgagaccgtgagcgaggggcggcgctacgccggcctcgagcactggatgccgctgttc
tacgaccacctcgacacgctgttcgactatctcggcggcgtgccgctggtcttcgatccc
caggtggaggacgccgccgccgagcggatcagcctcgtccaggactattaccaggcccgc
gagggcgcgatgaagacgccgcagcccggcgtcgccccctacaagcccctgccgccccgc
gccctctacctgacgccgaacgagctgaaggagcggatcgccaccgccaccgtggcgcgg
ctgacgcccttcgcgcagcccgaatcgcccgagcgcgccgtgatcgattgcggcgccaag
gccggacgaagcttcgcccccgagcgggccgacgagactgccagcgtgttcgacgccgcg
gtggcgcatatccgcgatctccagggatccggtcatcacgtgatcctgggagcctggtcc
gacggctcccgcgaccggctctgcggcgtgctcaccgaccacggcctcaggaagcccgtg
gcgatcacccggctcaccgacgtctacgcgctgaagcgcggcaccgacgcggcggtggcg
gtctggggcctggaggcgggcttcaccgcgggcgagctggccgtcgtctccgagggcgac
atcctgggcgaccggctggtccgccagaagcgcaaggccaagcggccccaggacgtgatc
ctggaggtgcaggcgctccagccgggcgacctcgtggtccacgccgaccacggcatcggc
cgcttcgtcggcctcaagacgatccacgccgcgggcgccccgcacgactgcctggaactg
cagtataccggcggcctgctgctcctgccggtggagaacatcgagctcctgacccgctac
ggctcggaggattccgaggtcgccctcgaccgcctcggcggcggcgcgtggcaggcccgc
aaggccaagatgaagcgccgcatcctcgagatggcgggcgagctgatcaaggtcgcggcc
cagcgcttcgtccgcaaggcccccgcgctgcaggcgcccgaggggctctacggggagttc
gccgcccgcttcccgttcgaggagaccgaggatcaggccaacgccatcgacgcggtgctg
gacgacctcaatgccggccgcccgatggaccgactggtctgcggcgatgtcggcttcggc
aagaccgaggtggcgctgcgcgccgccttcgcggcggcgatctccggcaagcaggtggcg
gtgatcgtcccgaccaccctgctcgcccgccagcactaccggaccttcgccgagcgcttc
aagggcctgccggtccaggtggcgcagctctcgcgcttcgcctccgcggcggagatgaag
cagacccgggcggggctcgccgccggcacggtcgacatcgtggtcggcacgcacgcgctc
ttggcgaagaacatcgccttcaaggatctcggcctgatcatcgtggacgaggagcagcat
ttcggcgtggcccacaaggagcggctgaaggcgctccaggccgacgtccacgtgctgacc
ctctcggcgaccccgatcccgcgcacgctccagctcgccatgacgggggtgcgggaactg
tcgatcatcgcgacacccccggtcgaccggctggtggtgcgcaccttcgtgacgccgttc
gaccccctgaccatccgggaggcgctgctgcgcgagcgctaccgcggcggccagtccttc
tacgtcgtgcccaggatcgaggatctggcggaagtcaagaagttcctcgacgccgagatg
cccgagatcaaggtcgcggtcgcccacggccagatggcggcgggccagctcgaggacgtg
atgacggccttctacgagggcaagttcgacgtgctgctctcgaccacgattgtagaatcg
ggcctcgacatccccaccgccaacacgctgatcgtccaccgggccgacatgttcgggctg
gcccagctctaccagctgcgcggccgcgtcgggcgctcgaaggcgcgcgcctacgcgctg
ttcacgacgccggcgaaccgccagctcaccgcccaggccgagcagcgcctcaaggtgctc
cagagcctcgacacgctgggcgcgggcttccagctcgcctcccacgacctcgacatccgc
ggcgccggcaacctgctcggcgacgcgcagtccggccacatcaaggaggtcggctacgag
ctctaccagcagatgctggaggacgcggtgacggcgctgaaggccggcatcgaggacgtg
cccgaggaggcgtggtcgccgaccatcgcgctcggcgcaccggtcacgatcccggaggat
tacgtcgaggatctcggggtgcggctcgccctctaccggcggctcgccaccatccaggac
gacgccgagatggagagcttcggcgccgagctgatcgaccggttcgggccgctgccgccg
gaggtggagcagctcctcaagatcggcacgatcaagatcctctgcctcaaggcgaacgtc
gagaaggtcgaggcggggccgaagggcgtggtggtccatttccgcgaccgctcctacgcc
aacccgcaggggctggtggcctacgtggccgagcaggcctcgttcgcgaaggtgcggccc
gacatgagcgtcgtgttcgtgcgcgagctgaccaccgtcccggcgcggctcaagaccgcc
accgaggtgctgcgcagcctcgtgacgatcgccgggcgggggaagaaggcggcgtga
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