Meiothermus ruber DSM 1279: K649_08425
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Entry
K649_08425 CDS
T02636
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mre
Meiothermus ruber DSM 1279
Pathway
mre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K649_08425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mre03019
]
K649_08425
03009 Ribosome biogenesis [BR:
mre03009
]
K649_08425
Enzymes [BR:
mre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K649_08425
Messenger RNA biogenesis [BR:
mre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K649_08425
Ribosome biogenesis [BR:
mre03009
]
Prokaryotic type
rRNA helicases
K649_08425
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Hera_DD
Hera_RBD
ResIII
GUCT
DD_DDX21-DDX50
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AGK04980
UniProt:
D3PP22
LinkDB
All DBs
Position
complement(1688224..1689894)
Genome browser
AA seq
556 aa
AA seq
DB search
MEFSAFTLRPEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIA
NRLDAARERGRAPRALILTPTRELALQVAKELEWLAPHLTITPIYGGTGYGKQAEALKRG
TDVVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQTLL
FSATLPTWARRLSERYQKAAIHINVIKDEAISYEEVAIQAPIHNRLSVLSDLLFAYAPER
TIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLVATDVAAR
GLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETLERELKRN
FKRVNPPTPEEVMAAKWAMLARRIAKQPEADKKLWREQAERLIAEGGVDAVAGMLALILG
GAPTPKSLMTGEENWVTVKLAGSRISVNRAVAVLKSAGAGEIGRIRLDGDVAAYVDIRPE
DLSRLDHTALRDLRLTKASEVPAETRQSERQGQGFARGQGKRQGQGRREGSSQRERPFES
PSENRREGERRRVVYR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggagttttccgcatttacgttgagacccgaggttgcccaggccatccaggccaaaggt
tttaccaccgccacccccatccaggccgcggccattccgctggccctcgagggcaaagat
gtgctgggccaggcccgcaccggcaccggcaagaccctggcctttggcatccccatcgcc
aaccggctggacgcggcccgcgagcgcgggcgcgctcccagggcccttatcctcaccccc
acccgcgaactagcccttcaggtagccaaagagctggagtggctggccccccacctgacc
atcacccccatctacgggggcaccggctacggcaagcaggccgaagccctcaagcgcggc
accgacgtggtggtagccaccccaggccgggccattgattacctcgagcagcgcgtcctt
gacctttccagaattgagattgcggtgctggacgaggccgacgagatgctctcgatgggc
tttgaggaagccgtcgaacagctcctggaagccaccccacccacccgccagaccctgctg
ttctcggccaccctacccacctgggcgcgccgcctctccgagcgctaccaaaaggcggcc
atccacatcaacgtgatcaaggacgaggccatctcctacgaagaagtggccattcaagcg
cccattcacaaccgcctctcggtgctttcggatctgcttttcgcctatgcacccgagcgc
accatcgtttttaccagcaccaaggccgagtgcaatgacctggccctgggcttagaaagc
cgggcccacagcgcggcccccatccacggcgatatgggccagattgaccgtgaacgggtg
atggaacgcttccgcagcggggcggtgagcgtgctggtggcaaccgatgtggccgctcga
ggcctcgacatccccgaggtggacctggtggtgcactaccgcctgcccgaccaaaacgag
tcatacctgcaccgctcgggccgcaccgggcgggcggggcgctcgggcaaggtggtgatt
ctgtacggcccgcgtgagaagcgcgaactggagaccctcgagcgcgaactaaagcgtaac
ttcaagcgggttaatccccccacccccgaggaggtcatggccgccaagtgggccatgctg
gcccgccgcatcgccaagcagcccgaggccgataaaaagctctggcgcgaacaggccgaa
cgcctgatagccgagggcggcgtcgacgcagtggccggtatgctggccctgattctgggc
ggcgcccccacccccaagagcctgatgaccggtgaggagaactgggtcacggtcaagctc
gcgggctcgcgcatcagcgtgaaccgggcggtggcggtgttgaagagcgccggcgctggg
gagattggccggattcgcctggatggggatgtggccgcctacgtggacatccgccccgag
gatctgagcaggctggatcacaccgcgctgcgcgatctgcgcctcaccaaggccagcgag
gttcccgctgaaacccggcagtccgagcgccaggggcagggcttcgcgcgcggtcagggc
aagcgccagggtcagggtcgccgcgaaggaagcagccagcgcgagcggcccttcgaaagc
ccgtccgaaaaccgccgcgaaggggaacgccggcgggtcgtgtaccgataa
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