Mycolicibacterium rufum: MJO55_05150
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Entry
MJO55_05150 CDS
T08167
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mrf
Mycolicibacterium rufum
Pathway
mrf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MJO55_05150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrf03021
]
MJO55_05150
03400 DNA repair and recombination proteins [BR:
mrf03400
]
MJO55_05150
Enzymes [BR:
mrf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MJO55_05150
Transcription machinery [BR:
mrf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MJO55_05150
DNA repair and recombination proteins [BR:
mrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MJO55_05150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ULP37822
UniProt:
A0A9X2Y9H5
LinkDB
All DBs
Position
complement(1919059..1923012)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVERKAVEDQRDADLEARAQKLEAD
MKELEDEGAKSDVKRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDELL
YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQTNANSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEIEGDTGEFT
PAAKDQPESGVYSSPAEAIMALDRGALSVRAKIRVRLTQQRPPVELEAALFENGWTPGDA
WIADTTLGRVLFNELLPKGYPFVNEQMHKKVQARIINDLAERYPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPQKQEILDRYEKEADGIEKKYQRGALNHDERNEALVKIWQDA
TEEVGKALEEYYPEDNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRENDCETERGITVTL
AEKQDDGTLVRDQHIETSAYARTLATDAVDADGNVVVERGHDLGDPAIDALLAAGITEVK
VRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGQDIVGGLPRVQELFEARVPRNRAPIADVTGRIRLEESDKFYKITIVPDDGGEEVVYDK
LSRRQRLKVFKHEDGSERLLTDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGNE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP
AGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgttagacgtcaacttcttcgatgaactccgcatcggtctggccaccgcggacgacatc
cgtaactggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccc
gtcacacacatctggtacttcaagggtgtgccgtcgcggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgcggcctacgtcatcacggcggtcgac
gacgagatgcggcacaacgagctgtccaccctcgaggcggagatggtcgtcgagcgcaag
gcggtcgaggatcagcgcgacgccgacctcgaggcgcgggcgcagaagctcgaagccgac
atgaaggagctcgaggacgagggcgccaagtccgacgtcaagcgcaaggtccgggacggc
ggcgagcgcgagatgcgtcagctgcgtgaccgcgcccagcgcgagctcgaccggctcgac
gagatctggacgacgttcaccaagctggctcccaagcagctgatcgtcgacgagctgctc
taccgcgagctgcaggaccgctacggcgagtacttcaccggcgccatgggcgcggagtcg
atcaagaagctcatcgagaacttcgacatcgacgccgaggccgagtcgctgcgcgacacg
atcaagaacggcaagggccagaagaagctgcgcgcgctgaagcggctcaaggtcgtcgcg
gcgttccagaccaacgccaactcgccgatgggcatggtgctcgacgcggtcccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgccacgtcggacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggctcaagcgactgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgatgcc
ctgttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctgaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtgggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcgctggagctgttcaagcctttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgtcagcgt
ccgcaggtgtgggacgtcctcgaagaggtcatcggcgagcaccccgtgctgctcaaccgc
gcacccacgctgcaccgcctcggtatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgagtgcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtctcccgcgtcgggccgcccgctggccatgccgcgtctggac
atggtgacggggctgtactacctgaccaccgagatcgagggcgacaccggcgagttcacg
ccggccgccaaggatcagccggagtccggggtgtacagctcgccggccgaggccatcatg
gcgctggatcgcggcgcgctgtcggtgcgggcgaagatccgggtccggttgacgcagcag
cgtccgccggtcgagctcgaggctgcacttttcgagaacggctggactccgggcgacgcc
tggatcgccgacaccacgctgggccgtgtgctgttcaacgagctgctgccgaagggctac
ccgttcgtcaacgagcagatgcacaagaaggtgcaggcccggatcatcaatgatctggcc
gagcgctacccgatgatcgtcgtcgcgcagaccgtcgacaagctcaaggacgccggcttc
cactgggccacgcgttccggggtgacggtctcgatggccgacgtgctggtgccgccgcag
aagcaggagatcctcgaccggtacgagaaggaagccgacgggatcgagaagaagtaccag
cgcggtgcgctcaaccacgacgagcgcaacgaggccctggtcaagatctggcaggacgcg
accgaagaggtcggtaaggcgctggaggagtactaccccgaggacaacccgatcatcacg
atcgtgaagtccggcgcgacgggcaacctcacccagacccgcaccctggccggcatgaag
ggcctggtgacgaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgacggtgttggagtacttcatcaacacccacggtgcccgcaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggctacctgacccgccgcctggtggacgtgtcg
caggacgtcatcgtccgcgagaacgactgcgagaccgagcgcggcatcactgtcacgctg
gccgagaagcaggacgacggcaccttggtgcgcgatcagcacatcgagacgtcggcctac
gcccgcaccctggcgaccgacgcggtcgacgccgacggcaacgtcgtcgtcgagcgtggt
cacgacctgggtgatccggcgatcgacgcgctgttggccgcgggcatcaccgaggtcaag
gtccggtcggtgctgacctgcacgacgggcaccggcgtgtgcgcgatgtgctacggccgt
tcgatggcgaccggcaagctggtcgacatcggcgaggcggtcggcatcgtggccgcgcag
tcgatcggtgagcccggcacgcagctgacgatgcgtaccttccaccagggtggtgtcacc
ggtggtcaggacatcgtcggtggtctgccccgcgtgcaggagctgttcgaggcccgcgtg
ccccgcaaccgcgccccgatcgccgacgtcactgggcggatccgcctggaggagagcgac
aagttctacaagatcaccatcgttcccgacgacgggggcgaggaggtcgtgtacgacaag
ctctcgcgtcgtcagcgcctgaaggtgttcaagcacgaggacggctccgagcgtctgctg
accgacggcgaccacgtcgaggtgggccagcagctgatggaaggctcggccgatccgcac
gaggtgctgcgcgtccagggtccccgcgaggtgcagatccacctcgtcaaggaggtccag
gaggtgtaccgcgctcagggtgtgtcgatccacgacaagcacatcgaggtcatcgtccgg
cagatgctgcgtcgcgtcacgatcattgattcgggtgcgacggagttcctgcccggctcg
ctgaccgagcgtggcgagttcgagacggagaaccgtcgcgtggtcgccgagggcaacgag
cccgcggccggccgtccggtgctgatgggcatcaccaaggcgtcgctggccaccgattcg
tggctgtcggcggcgtcgttccaggagaccacccgcgtgctgaccgatgcggcgatcaac
tgccgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggcaagctgatcccg
gccggcaccggcatcaaccggtaccgcaacatccaggttcagccgaccgaagaggcccgt
gctgcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccag
gccaccggcgccgcggtgccgctggacgattacggctacagcgattaccggtag
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