Mycolicibacterium rufum: MJO55_17970
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Entry
MJO55_17970 CDS
T08167
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mrf
Mycolicibacterium rufum
Pathway
mrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJO55_17970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrf03019
]
MJO55_17970
03009 Ribosome biogenesis [BR:
mrf03009
]
MJO55_17970
Enzymes [BR:
mrf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MJO55_17970
Messenger RNA biogenesis [BR:
mrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MJO55_17970
Ribosome biogenesis [BR:
mrf03009
]
Prokaryotic type
rRNA processing factors
MJO55_17970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
ULP35178
LinkDB
All DBs
Position
complement(3743778..3746810)
Genome browser
AA seq
1010 aa
AA seq
DB search
MADNDNLHDPAHALPGEAQQPADSAGETAAAPPERLRVHSLARVLGTTSRRIIDALVELD
GRTRSAHSTIGRDEADRVREVLAAPEPDAATPEAVAPQAAPAEPQAAPAEPQAAPAEPQA
APAAEAHPEPEPDSAPEGEPESRLILETPAAADTEPADYLPLFVAPQPVRLDEPTDADED
SDDDSDDDEDDTETDADEEQSGRPSAKRRRRGRRGRGRGRGEQNGDEAATDDEDQTADAG
EAAENGDESDEDSAEDDGNGGEGGSRRRRRRRRRKSGSGDDGDASPDDPPNTVVHEREPR
QSGKGNKSSSDSEIQGISGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLARREAVERTM
VVRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAA
FVDIGRGRNGVLYAGEVNWEAAGLGGAQRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQ
VSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIR
SDVERLQGRWNEIEAKAAEITAKKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGDDA
WTTINDYVTSVAPELLPRMKKYEPAGSDGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVI
DRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVL
ESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKKLGTGLVEAFSTACTHCGGRGI
VLHGDPVDSASGNGRKSESGGGGNSGGGGGRRGKRGKRGAREQEVQVAKVPAHLPGEHPM
FKAMAAANGKHEDDGDEHDGASTEVVDETAELEPGAVRGVVTDAEDEELDDDFDNSEEDS
DDEDSDDDSEEIAFDSDDEDDDIDDDIEVLDDSDDDSDDSDDSDDDDESDDEDDDDSDDE
DDDDSDDEDDEDSDDEDEDDEDDGPAPVAAPPVRQRRRAAARPAGPPSQD
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacaatgacaatcttcacgaccccgcccacgctctcccgggagaggcgcagcaa
cccgctgactccgccggtgagacagcggccgcaccgcctgaacggctgagggtccactcc
ctggcccgggtgctcggcaccacgagcaggcgcatcatcgacgcgctggtcgagctggac
ggccggacccgcagcgcgcactcgaccatcggccgtgacgaggccgaccgggtgcgggag
gtgctggcggcgccggagcccgacgccgcgacccccgaggccgtcgccccgcaggccgcg
cccgctgagccgcaggccgcgcccgctgagccgcaggccgcacccgctgagccgcaggcc
gcaccggcggcggaggcccaccccgagcccgagcccgacagcgcgcccgagggcgagccg
gagtcgcggttgatcctcgagacgcccgccgcggccgacaccgagcccgccgactacctg
ccgctgttcgtcgcgccgcagcccgtccgcctcgacgagcccaccgacgccgacgaggac
agcgacgacgactccgacgacgacgaggacgacaccgagaccgacgccgacgaggagcag
tccgggcgtccgtccgccaagcgccgccgccgcggacgccgcggccgcggtcgcggtcgg
ggcgagcagaacggtgacgaggccgccaccgacgacgaagaccagaccgccgacgcgggg
gaggccgccgagaacggcgacgagtccgacgaggacagcgccgaggacgacggcaacggt
ggcgagggcggcagccgccgccggcgccggcgccggcgccgcaagtccggttcgggtgac
gacggcgacgcctcgcccgacgatccgcccaacaccgtcgtgcacgagcgtgagccccga
cagtccggcaagggcaacaagagctccagcgactccgagatccagggcatcagcggctcg
acccggctggaggccaagcgccagcgccgccgcgacggtcgcgacgccggccgtcgccgt
ccgccgatcctgagcgaggcggagttcctcgcccggcgggaagccgtggaacgcaccatg
gtggtgcgcgacaaggtccgcaccgaacccccgcacgaaggtgcccggtacacgcagatc
gcggtgctcgaggacggcgtcgtcgtcgaacacttcgtgacgtcggcggcctcggcatcc
ctggtcggcaacatctacctcggcatcgtgcagaacgtgctgccctcgatggaggcggcg
ttcgtcgacatcggccgcggccgcaacggtgtgctctacgccggcgaggtgaactgggaa
gccgcgggcctcggcggcgcgcagcgcaagatcgagcaggccctcaagcccggcgactac
gtcgtcgtccaggtcagcaaggacccggtcgggcacaagggcgcccggctgaccacgcag
gtgtcgctggcgggtcgctatctggtgtacgtgcccggcgcatcgtcgacgggcatcagc
cgcaagctgcccgacaccgagcgccaacgtctcaaggagatcctgcgcgaggtcgtcccc
tccgatgccggggtgatcatccggaccgcctccgagggcgtcaaggaagacgacatccgc
agcgacgtcgagcgcctgcagggccggtggaacgagatcgaggccaaggccgccgagatc
accgcgaagaaggccggcgccgccgtcgccctctacgaagagcccgacgtgctcgtcaag
gtgatccgcgacctgttcaacgaggacttctccggtctgatcgtgtcgggcgacgacgcc
tggaccaccatcaacgactacgtgacgtcggtggcgcccgagctgctgccgcggatgaag
aagtacgaacccgccggttcagacggccccgatgtgttcgccgtgcaccgcatcgacgag
cagctggccaaggcgatggaccgcaaggtgtggctgccgtcgggcggcaccctggtgatc
gaccgcaccgaggcgatgacggtcgtcgacgtcaacaccggcaagttcaccggatcgggc
ggcaacctggagcagacggtcacccgcaacaacctggaagccgccgaggagatcgtccgg
cagctgcggctgcgcgacatcggcggcatcgtggtgatcgacttcatcgacatggtgctg
gagtccaaccgggatctcgtgctgcgccggctcaccgaggcgctggcccgggaccgcacg
cgtcaccaggtgtccgaggtgacgtccctgggtctcgtgcagctgacccggaagaagctc
ggcaccgggctcgtcgaggcgttctccacggcgtgcacccactgcggcgggcggggcatc
gtgctgcacggtgacccggtggactccgcgtccggcaatgggcgcaagtccgagtctggc
ggcggcggaaacagtggcgggggcgggggtcggcgcggtaagcgcggcaagcgcggcgcc
cgcgagcaggaggtgcaggtggccaaggtgccggcgcacctgcccggcgagcacccgatg
ttcaaggcgatggccgccgccaacggcaagcacgaggacgacggcgacgagcacgacggg
gcgtcgaccgaggtggtcgacgagaccgccgagttggagccgggcgcggtccgcggggtg
gtcaccgacgccgaggacgaggaactcgacgacgacttcgacaactccgaggaggactcg
gacgacgaggactcggacgacgactccgaggagatcgcattcgactccgacgacgaggac
gacgacatcgacgacgacatcgaggtcctcgacgactcggacgatgactccgatgactcc
gatgactccgatgatgacgacgagtcggacgacgaggacgacgacgactcggacgacgag
gacgacgacgactcggacgacgaggatgacgaggactcggacgacgaggacgaggacgac
gaggacgacggacctgcgcccgtcgctgcccctccggtccggcagcgccggcgtgccgcg
gcacgacccgccggtccgcccagccaggactga
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