Mycolicibacterium rufum: MJO55_22360
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Entry
MJO55_22360 CDS
T08167
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mrf
Mycolicibacterium rufum
Pathway
mrf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MJO55_22360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrf03400
]
MJO55_22360
Enzymes [BR:
mrf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MJO55_22360
DNA repair and recombination proteins [BR:
mrf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MJO55_22360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Thr_synth_N
Motif
Other DBs
NCBI-ProteinID:
ULP35955
LinkDB
All DBs
Position
complement(4660606..4662870)
Genome browser
AA seq
754 aa
AA seq
DB search
MVDRVGRVKLTNPDKVLYPETGTTKAEIFDYYVEVAEAMLPHIAGRAVTRKRWPNGVAEG
SFFEKQLASSAPEWLDRGTIAHKSGTTTYPLIDTVEGLAWIAQQAALEVHVPQWRFVDHQ
VGPATRVVFDLDPGEGVSMRQLCEVAHEVRDLISDIGLSTFPLTSGSKGLHLYVPLDDPI
SSRGASVLAKRVALQLEQTMPTRVTATMTKSLRDGKVFLDWSQNNGNKTTIAPYSLRGRD
HPTVAAPRTWEEIGDPDLRHLTFHEVLERLDRDGDLLAELDEPLPVPDRLTTYRGMRDSA
KTPEPVPPEAPRVGNNDAFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPESPSENRLA
VHTEDHPMEYLTFAGEIPKGEYGGGEVFIWDTGTYETEKFNDNPPDGPDRGGEVIVTLHG
AKVQGRYALIQTNGKNWLAHRMKDQRQTAFTDLLPMLTTEGSVERLPKAQWAFEGKWDGY
RVLVEADHGTLAVRSRRGRDVTAEYPQFQALAADLADHHVILDGEAVALDESGVPSFREM
QNRKRSTRVEFWAFDILHLDGRSLLRAKYSDRRRLLEALADQGGLIVPAQIDGDGPDALA
YAEEQRWEGVVAKKRDSTYQPGRRSAAWIKDKLWNTQEVVIGGWREGNGGRTSGLGALLL
GVPTEDGLQFVGRVGTGFTEKELASLRTTLAPLHTDESPFAAPLPRQDAKGVTFVRPELV
GEVRYSERTGDDRLRQASWRGLRPDKEPDEVTWE
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
gtggtggatcgtgtgggccgggtcaagctgaccaacccggacaaggtgctgtaccccgag
acggggaccaccaaggccgagatcttcgactactacgtcgaggtggccgaggcgatgctg
ccgcacatcgccgggcgcgcggtgacacgcaagcgctggccgaacggggtcgccgagggg
tcgttcttcgaaaagcagttggcctcctcggcgccggagtggctcgaccgcggcacgatc
gcccacaagtcgggcaccaccacctacccgctgatcgacaccgtcgagggtctggcctgg
atcgcgcagcaggccgcgctggaagtgcatgtgccgcagtggcgcttcgtggatcaccag
gtgggcccggcgacccgtgtcgtgttcgacctcgatcccggcgagggggtgtcgatgcgc
cagctctgcgaggtcgcgcacgaggtgagggacctgatctccgacatcgggctgagcacc
ttcccgctgaccagtggcagcaagggcctgcacctgtacgtgccgctcgacgatccgatc
agctcgcggggtgcgtcggtgctcgccaaacgggtggcgctgcaactggaacagacgatg
cccacgagggtcaccgcgacgatgacgaagagtctgcgcgacggcaaggtcttcctcgac
tggagtcagaacaacgggaacaagacgaccatcgccccgtactcgctgcgcggacgcgat
catccgacggtggccgcgccccgcacgtgggaggagatcggcgatcccgacctgcggcac
ctgaccttccacgaggtcctcgaacggctggaccgcgacggcgacctgctcgccgaactc
gacgagccgttaccggtgccggaccggttgaccacctaccgcggcatgcgcgacagcgcg
aagacgcccgagccggttccccccgaggcgccccgggtcggcaacaacgacgcgttcgtc
atccaggagcatcacgcccgccggctgcactacgacttccggctggagcgcgacggggtg
ctggtcagttgggcggttccgaagaacctccccgagtcgccgtcggagaaccgtctcgcc
gtgcacaccgaggatcacccgatggagtacctgacattcgcgggggagatcccgaagggc
gagtacggcggtggcgaggtcttcatctgggacaccggtacgtatgagaccgagaagttc
aacgacaacccacccgacggtccggaccgcggtggcgaggtgatcgtcacgctgcacggc
gccaaggtgcagggccggtacgcgctgatccagaccaacggcaagaactggctcgcgcac
cggatgaaggaccagaggcagacggcgttcaccgacctgctcccgatgctgaccaccgag
ggatccgtcgagcgactccccaaggcgcagtgggctttcgagggtaaatgggacggctac
cgggtgctcgtcgaggccgaccacggaaccctggccgtgcggtcccgccggggtcgcgac
gttaccgcggagtatccgcaattccaggcgctcgctgcggatctcgccgaccaccacgtc
atcctcgacggcgaggcggtggcactcgacgagtccggcgtccccagtttccgggagatg
cagaatcgcaagcggtcgacccgcgtcgagttctgggcgttcgacatcctccacctcgac
gggcgatccctgctgcgcgccaagtactccgaccgcaggcggctgctcgaggcgctcgcc
gaccagggcgggctcatcgtgcctgcgcagatcgacggtgacggccccgacgcgctcgcc
tacgccgaggagcagcgctgggagggggtggtcgcgaagaagcgggactcgacctatcag
cccgggcgccggtccgcggcgtggatcaaggacaagctgtggaacacccaggaggtggtg
atcggcggctggcgcgagggcaacggcgggcgcaccagcgggctgggcgcactgctgctc
ggtgtccccaccgaggacgggctgcagttcgtcggccgggtgggaaccgggttcaccgag
aaggagctggcctcgctgcgcacgacgctcgcaccgctgcacaccgacgaatcacccttc
gcggcaccacttccccgacaggatgcgaaaggggtcacgttcgtgcggcccgagctggtc
ggcgaggtccgctacagcgagcgcacgggtgacgaccgactgcgccaggcgagttggcgg
ggtctgcggccggacaaggagcccgacgaggtcacctgggagtga
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