Microbacterium rhizosphaerae: SM116_10380
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Entry
SM116_10380 CDS
T09585
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mrg
Microbacterium rhizosphaerae
Pathway
mrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SM116_10380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrg03019
]
SM116_10380
03400 DNA repair and recombination proteins [BR:
mrg03400
]
SM116_10380
Enzymes [BR:
mrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SM116_10380
Messenger RNA biogenesis [BR:
mrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SM116_10380
DNA repair and recombination proteins [BR:
mrg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SM116_10380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
WPR88191
LinkDB
All DBs
Position
complement(2323540..2325654)
Genome browser
AA seq
704 aa
AA seq
DB search
MTPTTTTRAEALDVLCALVGRDDAQFHDGQFEAIDALVDGRRRALVVQRTGWGKSAVYFV
ATMLLRRRGAGPTVLVSPLLALMRDQIAAAARAGVRAVKIDSTNAHEWGEVIAQLDRDEV
DVLLVSPERLNNPAFRDGQLPQIVARMGLLVVDEAHCISDWGHDFRPDYRRLRELIARMP
AGVPVLATTATANSRVVADVAEQLDAGSGEGDAGVLTIRGPLGRASLRLGVLRLPGAAQR
LAWLISHLGDLPGSGIIYTLTVAAANDTARLLRERGYDVRAYTGQTDPDEREQAEAALTQ
NRVKALVATSALGMGFDKPDLGFVIHLGAPSSPVSYYQQVGRAGRATESADVLLLPGAED
RDIWHYFATASMPDRERAERVLGALADAGAPLSTPALEAIVDIRRTPLELLLKVLDVDGA
VARVTGGWVSTGQPWAYDEDRYRRIAAERVAEQQHMLDYEETGQCRMEFLQRSLDDESAS
PCGRCDNCAGAWFPAQIAAEAADEAAAALDRVGVPIESRRQWPTGADRLGVPVRGRIAAD
EQASEGRALARLTDLGWGGMLRETFATGAGDGPLPPALLSASVRVLADWRWDERPLAVVA
MPSRSRPQLVGSLARGIAEIGRLPFLGSLDLVDGGPSGQPGGNSAFRVSNVWGRFSAAGL
DVPHGPVLLVDDRVESGWTLTVAARELRLAGASSVLPFVLALRG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgacgacgaccacccgtgccgaggccctcgatgtgctgtgcgcgctcgtcgga
cgcgacgacgcccagttccacgacggccagttcgaggcgatcgacgcgctcgtcgacggc
cgtcgtcgcgccctcgtggtgcagcggacgggctggggcaaatccgccgtgtacttcgtc
gcgacgatgctgctgcgccggcgcggtgccgggccgacggtgctcgtctcgcccctgctc
gccctcatgcgcgaccagatcgccgccgccgcgcgggcgggcgttcgggcggtgaagatc
gactcgacgaacgcgcacgagtggggcgaggtcatcgcccagctcgatcgcgacgaggtc
gatgtcctcctcgtctcgcccgagcggctcaacaacccggcgttccgcgacgggcagctg
ccccagatcgtcgcgcgcatgggcctgctcgtcgtcgacgaggcgcactgcatcagcgac
tggggccacgacttccgtcccgactaccggcgcctgcgcgagctcatcgcgcgcatgccc
gccggtgtcccggtgctcgcgacgactgcgacagccaacagccgcgtggtggctgacgtc
gcggagcagctggacgcgggctcgggggagggggatgcgggcgtcctgacgatccggggc
cccttggggcgcgcctccctccgactcggtgtgctgcggctgccgggcgccgcacagcgg
ctcgcctggctgatctcccacctcggcgatctgcccggctcggggatcatctacacactg
acggtcgccgccgcgaacgatactgcgcgcctgctgcgcgagcggggctacgacgtgcgg
gcctacaccggacagaccgatcccgatgagcgcgagcaggcggaggccgcgctcacgcag
aaccgggtgaaggccctcgtcgccacgagtgcgctcggcatgggcttcgacaagcccgac
ctgggattcgtcatccacctcggcgcgccgtcctctcccgtctcttactaccagcaggtc
ggccgcgctggccgggcgacggagtctgcggacgtgctgctcctgcccggtgccgaagac
cgagacatctggcactacttcgccaccgcgtcgatgcccgatcgggaaagggccgagcgt
gtgctcggtgcgctcgctgatgccggcgcgccgctgtccacccccgcgctcgaggcgatc
gtcgacatccgacggactccgctggagctgctgctgaaggtgctcgacgtcgacggcgcg
gtcgccagggtcacgggcgggtgggtctcgacgggccaaccgtgggcctacgacgaggat
cgctatcgccggatcgccgccgagcgcgttgccgagcagcagcacatgctcgactacgag
gagaccggtcagtgccggatggagttcctccagcgctccctcgacgacgagtcggcctcg
ccgtgcgggcgctgcgacaactgcgccggcgcctggttccccgcacagatcgcggcggag
gcggccgacgaggccgcggccgccctcgaccgggtgggcgtgcccatcgagtcgcgccgg
caatggcccacgggagcggaccgcctgggcgtgccggtccgcggccgcatcgccgccgac
gagcaggcgtccgagggtcgcgctctcgcccggctgaccgacctcggctggggcgggatg
ctccgcgagaccttcgcgaccggcgccggcgatggccctctgcctcccgcgctcctctcc
gcgagcgtccgcgtgctcgcagactggcgatgggacgaacggccgctcgccgtcgtcgcc
atgccgtcacgctccagaccccagctcgtcggatcgctcgcccgcggcatcgccgagatc
ggacgactgccgttcctcggctccctcgacctcgtggacggcggcccgtcggggcagccg
ggcggcaacagcgcgttccgcgtgtcgaacgtgtggggccggttctcggcagcgggactc
gacgtgccgcacggtcctgtgctcctcgtcgacgatcgggtcgagagcgggtggacgctc
accgtcgccgcacgcgaactgcgcttggccggcgcgagctccgtcctcccgttcgtcctc
gcgctgcggggctga
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