Mycolicibacterium rhodesiae: MycrhN_0743
Help
Entry
MycrhN_0743 CDS
T01685
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mrh
Mycolicibacterium rhodesiae
Pathway
mrh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MycrhN_0743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrh03021
]
MycrhN_0743
03400 DNA repair and recombination proteins [BR:
mrh03400
]
MycrhN_0743
Enzymes [BR:
mrh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MycrhN_0743
Transcription machinery [BR:
mrh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MycrhN_0743
DNA repair and recombination proteins [BR:
mrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MycrhN_0743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
AEV71378
UniProt:
G8RQH2
LinkDB
All DBs
Position
complement(756974..760927)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD
MKELEDEGAKSDVKRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL
YRELIDRYGEYFTGAMGAEAIKKLIETFDIDAEAEELREVIRSGKGQKKLRALKRLKVVA
AFQSNSNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTMIEGDTGEYV
AAAKDKPESGVYSSPAEAIMAMDRGALSVRANIRVRLTQQRPPIDLEAELFEDGWKPGDA
WTADTTLGRVLFNELLPTAYPFVNEQMHKKVQARIVNDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPQKQEILERHELEADRIEKQYQRGALNHDERNEALVKIWQDA
TEEVGKALEAYYPEDNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGVIVKL
AELQPDGTLLRDQHIETSAYARTLAIDAVDAKGNVVVERGHDLGDPAIDALLAAGIDEVK
VRSVLTCATGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVS
GGSDIVGGLPRVQELFEARIPRDKAPIADVTGRVQLEEGERFYKMTIIPDDGGEEVVYDK
LSRRQRLKVFKHDDGTERLLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGGE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP
AGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggtcttgccaccgcggacgacatc
cgtaactggtccttcggcgaggtaaagaagccggagaccatcaactaccgcacgctcaag
ccagagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggtgtgccgagccggctcgggtacctgctcgacctg
gcgcccaaggatctcgagaagatcatctacttcgcggcctacgtgatcacggccgtcgat
gacgagatgcgtcacaacgagctgtcgacgctcgaggccgagatggtcgtcgagaagaag
gccgtcgaggatcagcgcgacgccgacctcgaggcccgggcgcagaagctcgaagccgac
atgaaggagctcgaggacgagggcgccaagtccgacgtcaagcgcaaggtgcgggacggc
ggcgagcgcgagatgcgtcagctccgcgaccgcgcccagcgtgagctggaccggctcgac
gagatctggacgaccttcaccaagctggctcccaagcagctcatcgtcgacgaagtgctc
taccgagagctcatcgatcgctacggcgagtacttcaccggcgccatgggtgcggaggcc
atcaagaagctcatcgagaccttcgacatcgatgccgaggccgaggagctgcgcgaggtc
atccgtagcggcaagggccagaagaagcttcgcgcgctgaagcgtctcaaggtcgtcgcg
gcgttccagtccaacagcaactcgccgttgggcatggtgctcgacgcggttccggtgatc
ccgccggagctgcgtccgatggtgcagctcgacggtggccgcttcgccacgtcggacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggctcaagaggctgatcgatctc
ggtgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggtccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcactggagctgttcaagcctttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgtcagcgt
ccccaggtgtgggacgtcctcgaagaggtcatcggcgagcacccggtgttgctgaaccgc
gcaccgacgctgcaccgcctcggtatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcagtccacctgccgctgtccgccgaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcatccggccgccccctggccatgccgcgtctggac
atggtgacggggttgtactacctgaccaccatgatcgagggtgacaccggtgagtacgtg
gccgccgccaaggacaagccggagtcgggtgtgtacagctcacccgccgaggcgatcatg
gcgatggaccgcggcgcactgagcgttcgcgccaacattcgcgtgcggttgacccagcag
cggccgcccattgacctcgaagccgaactgttcgaggacggctggaagccgggtgacgct
tggacggccgacaccacgctgggccgggtgctgttcaacgagctgctcccgaccgcgtat
ccgttcgtcaacgagcagatgcacaagaaggtgcaggcgcggatcgtcaacgatctggcc
gagcgctacccgatgatcgtcgtcgcgcagacggtggacaagctcaaggacgccggcttc
tactgggccacccgttcgggtgtcaccgtgtcgatggccgacgtgctggtgccgccgcag
aagcaggagatcctggagcgtcacgagctcgaggccgaccggatcgagaagcagtaccag
cgcggcgcactcaaccacgacgagcgcaacgaggcgttggtcaagatctggcaggacgcc
accgaagaagtcggtaaggcgttggaggcctactaccctgaggacaacccgatcatcacg
atcgtgaagtccggcgctacgggcaacctgacccagacccgcacgctggcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgcccgatcaagtcctcgttccgc
gaggggctgacggtgctggagtacttcatcaacacccacggcgcccgtaagggtctggcg
gacaccgctcttcgtaccgctgactcgggttacctgacccgtcgtctggtggacgtgagc
caggacgtcatcgtgcgcgagaccgactgcgagaccgagcgcggcgtcatcgtcaaactg
gcggagctccagcccgacggcaccttgctccgcgatcagcacatcgagacgtcggcctac
gcgaggacgctggcgatcgacgcggtcgacgccaagggcaacgtggtcgtcgagcgtgga
cacgatctgggtgatccggcgatcgacgcgctgctggcggcgggtatcgacgaggtgaag
gtccgctccgtgctgacctgcgccacgggtaccggcgtgtgtgcgatgtgttacggccgc
tcgatggcgacgggcaagctcgtcgacatcggcgaggcggtcgggatcgtggctgcgcag
tccatcggtgagcccggcacgcagctgaccatgcgcaccttccaccagggtggtgtttcg
ggcggcagcgacatcgtcggcggtctgccccgtgtgcaggagctgttcgaggcgcgtatc
ccgcgtgacaaggcgcccattgccgatgtcaccggtcgcgtgcaactcgaagagggcgag
cgcttctacaagatgaccatcatcccggatgacggtggcgaggaagtggtctacgacaag
ctgtctcgtcgtcagcgcctgaaggtgttcaagcacgacgacggcaccgagcggttgctg
tccgacggcgaccatgtcgaggtcggccagcagctgatggaaggctccgcggatccgcac
gaggtgctgcgtgtccagggcccccgcgaggtgcagatccacctcgtcaaggaggtccag
gaggtctaccgggctcagggtgtgtcgatccacgacaagcacatcgaggtcatcgtccga
cagatgctgcgccgcgtcacgatcatcgattcgggtgcgacggagttcctgcccggctcg
ctgaccgaacgtggcgagttcgagaccgagaaccgtcgggtggttgccgagggcggcgag
cccgcggctggtcgtccggtgctcatgggtatcacgaaggcatcgctggccacggactcg
tggctgtcggcggcgtcgttccaggagaccacgcgcgtgctcaccgatgcggcgatcaac
tgccgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggcaagctgatcccg
gccggtacgggtatcaaccggtaccggaacatccaggtgcagccgaccgaggaagctcgg
gccgctgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggtcag
gcgaccggtgccgcagtgccgctggacgattacggctacagcgactaccgctaa
DBGET
integrated database retrieval system
