Marinomonas rhizomae: KDW99_00935
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Entry
KDW99_00935 CDS
T08610
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mrhi
Marinomonas rhizomae
Pathway
mrhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDW99_00935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrhi03019
]
KDW99_00935
Enzymes [BR:
mrhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KDW99_00935
Messenger RNA biogenesis [BR:
mrhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDW99_00935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
P-loop_SecA
UvrD-helicase
ERCC3_RAD25_C
AAA_22
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
UTV99743
LinkDB
All DBs
Position
complement(221187..222440)
Genome browser
AA seq
417 aa
AA seq
DB search
MSFASLKLHHDITQQVTKLGYTNPTPIQLAAIPAVLAGKDLMAGAQTGTGKTAAFALPLL
HHILQTQNSNNAQGIQVLVLTPTRELAQQVHASFVKYSANLSIQSVVAYGGASINVQLDA
LKQGCDVLVATPGRLLELIMKNLLDLSYLQTLVLDEADRMLDMGFIIDIQRILKKLPESR
QTLFFSATFNDDIFALSKTLLKDPELIEVDSRNTTATKVEQTIYAVDQDRKSALLSFLIG
SKNWQQVLIFTRTKQGADELAKEMQKDGITTQSIHGDKSQGARDRVLADFKNGKVRALVA
TDVAARGIDIEQLQYVINHELPYNAEDYIHRIGRTGRAGAAGLAVTLVSEKERYLLTDVE
KLVDEQFIVQWVPGFEPDLNKAANSQKKREPSKKALRAKALGLSPSRDKKPKTRRRR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgcgtctttaaaacttcatcacgacatcactcagcaagtcacaaaattgggt
tatacaaatccaactcccattcaacttgctgcgattccagccgttctcgctggaaaagac
ctcatggctggcgctcaaacaggaacaggaaaaacagcggcttttgctttaccgcttcta
caccacattctgcaaacgcaaaactcaaataatgcccaaggtattcaagtattggtgctc
acaccgactcgcgagttggcacaacaggttcatgccagcttcgtgaaatacagcgcaaac
ttatcaattcaatcagttgtcgcctatggtggtgccagcataaacgttcagcttgacgca
cttaaacaaggctgtgatgtattagttgctactcctggtcggttgcttgaactgatcatg
aaaaacctccttgacttaagctacctacaaactttagtcctagatgaagccgatcgaatg
ctcgacatgggatttatcattgatattcaaagaatattgaagaaattaccagagtcacgc
caaaccttatttttctcagccactttcaatgacgacatttttgcgcttagcaaaacatta
ctcaaggacccagaattaattgaagtggacagccgaaataccactgccactaaagtagag
cagactatttacgcagttgatcaagacagaaaaagcgctctactgtcgttcctcatagga
tccaaaaactggcaacaagtactaatctttactcgaaccaagcaaggcgcagacgagtta
gccaaagaaatgcaaaaggacggtattaccactcaatccattcatggagataaatcccaa
ggggcacgtgatcgcgtcttagccgattttaaaaatggcaaagttcgtgctcttgtagcc
acggatgttgctgcaagaggcattgatatcgaacagctgcaatacgttatcaatcacgaa
ttgccatacaatgccgaagattacattcatcgtataggtcgaacggggcgcgcaggtgca
gcaggtcttgctgtaacactcgtatcagaaaaagagcgctacttactaaccgacgtggaa
aagctggttgatgaacaattcattgtccagtgggtgcccgggtttgaacctgaccttaac
aaagccgccaactcacaaaagaaacgcgagccatctaaaaaagcgttacgagcaaaagca
ctgggcctttcgccctcaagagataaaaagccaaagacacgccgtcgccgttaa
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