Marinomonas rhizomae: KDW99_06125
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Entry
KDW99_06125 CDS
T08610
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mrhi
Marinomonas rhizomae
Pathway
mrhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDW99_06125 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrhi03019
]
KDW99_06125 (rnr)
03016 Transfer RNA biogenesis [BR:
mrhi03016
]
KDW99_06125 (rnr)
Enzymes [BR:
mrhi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KDW99_06125 (rnr)
Messenger RNA biogenesis [BR:
mrhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KDW99_06125 (rnr)
Transfer RNA biogenesis [BR:
mrhi03016
]
Prokaryotic type
tRNA degradation factors
KDW99_06125 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
UTW01553
LinkDB
All DBs
Position
1322935..1325541
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AA seq
868 aa
AA seq
DB search
MEKTKDKNTLSNKNINDPHKQREASKYDNPVPSREFILEFLATQNKSMGHFDLCKAFSLT
GEDEIEALRRRLIAMCRDNQMTSNQNDEYSPILESDLIEGYVQGNKEGHGFLLRQSDDDI
FLSARQMQNVMDGDKVKARLSGRSVKGRLDGVVVEVLERKHTQLVGRYYEESRTAFVTPE
NPRIAQDILITTESGLTPAHGQYVLAEIVSYAERGKPAQGLVKKVLGDFMAPGVEIEVAM
HRYEIPNEWPAAVEKQVKNFSTEVAEEDKAHRVDLRDTPFVTIDGEDARDFDDAVYCEKT
PGGWKLFVAIADVSHYVKKDTALDEEAIVRGNSVYFPGRVIPMLPEVLSNGLCSLNPDVD
RLAMVAEISLTSKGKMRGFKFYEGIIRSHARLTYSKVAKMIADEPEEQGIELRERYASIV
SHIDDLNGLYHVLKGARDERGAMEFDTIETRMVFDENSKIEHIIPVERNDAHKLIEECML
CANVAAAELLIKADLPALFRVHEGPKDDRLLTLRTYLGLLGLELTGGTKPTPTDYAALSE
AIKDRADARSIQTMMLRSMSQAVYQADNLGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRY
LIRGEGRPEVRQAHRVAGSPELKERKIYGYNHADMDGLGDSCSVTERRADEATRDVEAWL
KCQYVEQHLGEPFDGVVTAVTSFGLFVELQGLFVDGLVHISGLGQDYFVHDMEHQAIVGE
RTGRVFRLGDTLKVRVSNVNLEQRKIDLSLDEGSTRPARKKVERTDKTELEMQLAQLPPI
ELGGRSKPKSAAKVEGDKSKDAKPSKDGKESDGKAKKKRRSPASKGKRIRQKKSGTVSAN
GKPTTAATKKPKKPKKPKKSNAKPKAKD
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
attgaaaaaaccaaggataaaaatacattgagtaataaaaatattaacgatccccacaag
cagcgagaagcgtctaagtacgacaatcccgtaccaagccgtgaattcattctagagttt
cttgccacccaaaataaaagcatgggtcattttgatttatgcaaagcgttttcgctgact
ggcgaagacgaaattgaagccctccgtcgtcgtctcatcgctatgtgccgagacaatcaa
atgaccagcaatcaaaatgacgaatactcgccgattttagaaagtgacctgattgaaggt
tacgttcaaggcaataaagaaggtcatggtttcttgttgcgtcaaagcgatgacgatatt
ttcttatctgcccgtcaaatgcagaacgtgatggatggcgataaagtcaaagcccgtctt
tctggtcgtagcgttaaaggtcgcttagatggtgtcgtggttgaagtgctagaacgtaag
cacacgcaacttgtaggtcgatactatgaagaaagccgtaccgcttttgtgaccccagaa
aacccgcgtatcgcacaagatatcttgatcactacagaatcgggtttaacgccggctcat
ggtcaatatgtgttggccgaaattgttagctacgctgagcgcggtaaaccggctcagggt
ttagtgaaaaaagtccttggcgactttatggcgccgggcgttgaaattgaagtggcgatg
catcgttatgaaattcctaacgagtggcctgcagcggttgaaaaacaagttaaaaacttc
agcacagaagtggcagaagaagacaaagcgcatcgtgttgatttgcgtgatactccgttt
gtcactattgatggcgaagatgcgcgtgattttgatgacgccgtatattgtgaaaaaaca
ccgggtggctggaaactgtttgttgccattgccgatgtttctcattatgtgaaaaaagac
acggcgttagatgaagaagccattgttcgtggtaactcggtttatttccctggtcgcgtt
attcctatgttgccagaagtactgtcgaacggcttgtgttcattgaacccagatgttgac
cgtttggcgatggttgctgaaatctctttgacatccaaaggcaagatgcgtggctttaag
ttttatgaaggcattatccgctctcatgcgcgcttaacttacagcaaagtcgcgaaaatg
atcgcggatgaaccggaagagcaaggcattgagctgcgtgaacgttacgcgtctatcgtg
tcacatatcgatgatttaaatggtttgtatcatgtcttgaaaggtgctcgtgatgagcgc
ggtgcgatggagttcgataccatcgaaactcgcatggtgttcgacgaaaactctaagatt
gagcacattattcctgtagaacgtaacgatgcccataagctaatcgaagaatgtatgttg
tgtgccaacgtggccgcagcagagctattgattaaagcggatttgccggctttgttccgt
gttcacgaagggccaaaagacgaccgtttgttaaccttacgaacctaccttggcttgcta
ggtttagaactaacaggcggtactaaaccgacgccaacggattatgcggcactttctgaa
gcgattaaagaccgagcggatgctcgcagtattcagactatgatgttgcgttctatgtct
caggcggtatatcaagcggataatttgggccactttggtttgaattatgaagcttatacg
cactttacatcgccaattcgtcgttacccagatttgttggtgcatcgtgcgatacgttat
ttgattcgtggcgaaggccgtccggaagtgcgtcaggcacaccgagtggcgggcagccca
gaactgaaagaacgcaaaatctacggttacaaccacgctgatatggacggtttaggggat
tcttgttctgtgaccgaacgccgtgcagacgaagctacgcgtgatgttgaagcttggttg
aaatgccaatacgttgaacagcatttgggcgaaccgtttgacggtgttgttaccgccgtg
acctcgtttggtttgttcgttgagctacaaggtttgttcgttgatggattggtgcatatt
tctggtcttgggcaggattactttgttcatgatatggaacatcaagcgattgtcggtgag
cgcacaggtcgtgtgttccgccttggcgatacgttaaaagttcgcgtgtctaatgtgaac
ttggaacagcgtaagattgatttgagcttggatgaaggaagtactcgcccagcgcgcaaa
aaagttgaacgtaccgataaaaccgagcttgaaatgcaattggctcagttgccgccgatt
gaattaggtggccgctctaaacccaagtctgctgccaaagtagaaggtgacaagtcgaaa
gacgctaagccatcgaaagatggcaaagagtcggatggtaaggcgaagaaaaaacgtcgt
tcgccagcctctaaaggcaaacgtattagacagaaaaagtcgggtactgtgtcggcaaat
ggtaagccaactacggcggctactaaaaaaccgaaaaagcctaagaaaccgaaaaagagc
aatgctaagccaaaagcaaaagactga
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