Marinomonas rhizomae: KDW99_09090
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Entry
KDW99_09090 CDS
T08610
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mrhi
Marinomonas rhizomae
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrhi03019
]
KDW99_09090 (hrpA)
Enzymes [BR:
mrhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KDW99_09090 (hrpA)
Messenger RNA biogenesis [BR:
mrhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KDW99_09090 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
SRP54
nSTAND3
ResIII
T2SSE
PhoH
ABC_tran
nSTAND_NTPase5
AAA_23
Myosin_head
ATPase
SLFN-g3_helicase
NACHT
TsaE
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UTW01262
LinkDB
All DBs
Position
1934871..1938746
Genome browser
AA seq
1291 aa
AA seq
DB search
MPTNALMTRDRHLIDQKQAQLTKRQKEGLPFDRMQSEMNALIEKSETLHQARLSRMPKIT
YDESLPVAARADEIIQAIQENQVVIIAGETGSGKTTQLPKMCLQAGRGIAGLIGHTQPRR
IAARSVAERISDELQVSLGEQVGFQVRFSDESNEETLIKLMTDGILLAEIQQDKRLYKYD
TIIIDEAHERSLNIDFLLGYLKQVLAARPDLKVIVTSATIDVERFSQHFENAPIIEVSGR
TYPVEIRYQPLLSKSDSEELDEDQSMEQGVLDAVELLIAEERQSGYRGAGDILVFLPGER
EIRETAEILRRAELRGTEVLPLYARLSASEQQRIFKSYSGRRIVLSTNVAETSLTVPGIR
YVIDPGLARISRYSVRSKVQQLPIEKISQASANQRAGRCGRVADGICIRLYDEDDFNNRS
EFTDPEIFRTNLASVILQMANLKLGAVEKFPFVEMPEKRMINDGYRALTELGALNKERLT
PIGRQLAKLPIDPKLGRILIAAEQHSVLKEVAIIVSALSVPDPRERPQDKKTQSDQAHAV
DKDEDSDFAVFLNLWERFEEQRQALSQNQLRQYCRKQFLNFMRIREWRDIHRQIMIACKQ
LGFKEAHHEERHYEAIHRSLLAGMFTQVANKMEDSKEMLGCRSRKLAIFPGSMLFKKPPQ
WIMAAELVETSKLYARVTARIDPAWIEEYAAPFVKRQYFDPHFERNQGRIMAHEQVSLYG
LIIVAKRRIDYGHVNPEEAREIFIRSGLVEGELRTKQAFYRKNKALIESLETQEAKLRKR
DILVDDETVFSFYNARLPEHVRNLKSLEHFVKTEPDALLMTRDDLINQDVSVDDHAFPDS
FGLNGVALPIDYKFDPGQEADGATLKVPVGLLRQLSLEDLGWAVPGFIKERCEALLRALP
KALRRRFVPIPQFVDRVYPNLSKDRGDLLEQLSLQIKRETLIDIPLNEWNADKLDSHLTL
NLEVVDERGKVLGVGKNLAQLQAQFSDLVEESFAKFGTKQHEQEGLTSWPEQGIPERQEI
KQAGIKVTAFPALVAQGDHVSLKMFDDQNTALETHRKGVITLLKLTLSKEMRYLQKNLPH
LRESMLIFSPLGQKETLLDDLLNAVLDKVFLDGRALPRTKAEFESCVTNHKPQLVSVAND
MAGQLYRVLSSYQGVAKRMKGSIPLPWTRVYGDIKVQLQQLIYPGFIGNTPLFWLGQLPR
YFKGIEVRLERFQNHLNKENQYVSELESLWQIYSRQKKAHDEKALYDPELIKYRWMLEEY
RISLFAQSVGTLEPISDKRLSKQWQEVKKLV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgccgacaaatgccctaatgacgcgcgatcgtcatctaattgaccaaaaacaagcacag
cttaccaagcgtcaaaaggaaggtttgccttttgaccgtatgcaatctgaaatgaatgca
ctcatcgaaaagtctgagaccttgcatcaagctcgtttatctcgcatgccaaaaattacc
tacgatgaaagcttgccggttgctgctcgcgccgatgaaattatccaggcgattcaagaa
aaccaagtggtgattattgccggtgaaacaggctctggtaaaaccacgcaattgcctaaa
atgtgtttgcaggctggccgcggtatcgcgggcttgattgggcacacgcaaccaagacga
atcgccgctcgcagcgtggctgaacgtatcagtgatgagttgcaggtaagcttgggtgaa
caagtgggttttcaagttcgttttagtgacgaaagtaatgaagaaaccctgattaaactg
atgaccgacggtatcttgttggccgaaattcagcaagataagcgcctgtataaatacgat
accattatcatagatgaagctcatgaacgtagcttaaacatcgatttcttgcttgggtat
ttaaagcaagtgttggcagcgcgtccagatctaaaagtcattgttacttctgcgaccatc
gacgttgaacgtttctcccagcattttgaaaacgcacctattatcgaagtatctggtcga
acttatccggttgaaattcgctaccagcctttgttaagtaagtctgactcggaagagcta
gacgaagatcaaagcatggagcaaggtgttttagatgcggtcgagctattgatcgcggaa
gagcgtcagtctggctatcgtggtgcgggtgatattttggtgttcttgcccggtgagcga
gaaattcgtgaaaccgccgaaattcttcgtcgtgctgaactgcgtggcactgaagtattg
cctttgtatgcgcgattgagcgccagtgaacagcagcgtattttcaaatcctattcaggt
cgtcgtattgtattgtcgaccaacgtcgcagaaacctcgttaaccgttccgggcattcgg
tatgttatagatccgggtttagctcgaattagccgttacagtgtgcgatctaaagttcag
cagttgcccattgaaaaaatcagccaagccagtgcgaatcagcgagcagggcgatgtggt
cgtgtagcggatggtatttgtattcgcttgtatgatgaagatgattttaacaatcgttct
gagtttaccgatccggagattttccgcaccaacttagcgtcggtcattttgcagatggcc
aacttgaagcttggtgctgttgagaagtttcctttcgttgaaatgcctgaaaagcgcatg
atcaatgatggttatcgtgctttgacggagctgggggcgctgaataaagaacgactcacg
ccgattggtcgtcagttggctaagttgccaattgacccgaaattaggtcgtatcttaatt
gcggcagagcaacatagtgttctcaaagaagtggcgattattgtcagtgcgttatcggtt
ccagatcctcgagagcgtccgcaagacaagaaaacgcaatccgaccaagctcatgctgtc
gataaagacgaagattctgacttcgctgtgttcttgaatttgtgggagcgctttgaagag
cagcgccaagccttgtcacagaatcaattacgccaatattgccgtaagcaatttttgaac
tttatgcgtatacgcgaatggcgtgatattcatcgccaaatcatgattgcttgtaagcag
cttggttttaaagaagcgcatcatgaagaacgtcactatgaagcgattcatcgttctttg
ctggcggggatgtttacgcaagtcgccaataaaatggaagacagcaaggaaatgcttggg
tgtcgttcgcgcaaattggcgattttcccaggctccatgctattcaaaaaaccaccacaa
tggattatggcggcggagttagttgaaacgagcaagctgtacgcgcgagtgacggctcgc
atcgaccctgcttggatcgaagaatatgccgcaccgtttgtaaaacgccaatactttgat
ccgcattttgagcgtaaccaaggccgtatcatggcccatgagcaagtctcgctttatggc
ctaattattgtggcgaagcgtcgcattgattacggccatgtgaatcctgaagaagcgcgc
gagatctttattcgatctgggctggtggaaggtgaacttcgcaccaagcaggctttttat
cgcaagaataaagccttgattgagtcgttagaaacccaagaagctaaattacgtaaacgc
gatattttggttgatgatgaaacggtattctctttttataatgctcgcttgccagaacac
gtgcgcaaccttaaaagtttagagcatttcgttaaaaccgagcctgatgctctgttgatg
actcgtgacgatttgatcaatcaggatgtgagtgttgatgatcatgctttcccagattct
tttggtctaaacggtgttgcgctacctattgattacaagttcgatcctggccaagaagcc
gacggtgctactctaaaggtccctgttgggttgttgcgtcagttgagcttagaagatcta
ggttgggccgtccccggctttatcaaagagcgctgtgaagccttgctgcgcgcgttgcca
aaagcgctacgccgtcgttttgtaccgattccgcagtttgttgatcgcgtatacccaaat
ttgtcaaaagacagaggcgatttgcttgagcaacttagcttgcagattaaacgcgaaacc
ttgattgatattccgcttaatgaatggaatgccgataagctggattctcatttaaccttg
aatctagaggtggtggacgaacgcggcaaagtgctgggtgtgggtaaaaacttggcgcag
cttcaggctcagtttagtgacttggttgaagagagttttgcgaaatttggtaccaagcaa
catgaacaagaaggtttaacgtcttggccggagcagggtattcctgaacgccaagagatc
aagcaagctggcatcaaggtcacggcatttcccgccttggtagcacaaggcgatcatgtt
tcattgaaaatgtttgatgatcaaaataccgcattagaaacgcatcgaaaaggtgtgatc
accttacttaagctaaccttgagcaaagagatgcgttacttacaaaagaacttgccacat
ttaagagagtcgatgttgatattctcgccattagggcaaaaagaaaccttgctggatgat
ttacttaatgcggttttagataaggttttcttagatggccgagctttgccgcgtactaaa
gcggaatttgaaagctgcgtcactaatcataaaccgcaattagtaagcgttgcgaatgat
atggcagggcagctttatcgcgtattgtcctcttatcagggggtcgcaaagcgaatgaag
ggcagcattcctttaccttggacgcgggtttatggtgacattaaagtgcaattacaacag
cttatttaccctggctttattggcaatacaccgctgttttggctgggacaattaccgcgt
tatttcaaaggaattgaggtgcgcttagagcgttttcagaatcatttgaacaaagagaac
caatatgtgtctgaattagaaagcctttggcagatctattctagacagaaaaaagctcat
gacgaaaaagccttgtacgacccagagttgattaaatatcgctggatgttagaggaatac
cgtatttctttatttgcgcagtcggttggtacattagagccaatttcagataagcgcttg
tctaaacagtggcaagaagttaaaaagttggtctga
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integrated database retrieval system
