Marinomonas rhizomae: KDW99_10180
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Entry
KDW99_10180 CDS
T08610
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mrhi
Marinomonas rhizomae
Pathway
mrhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDW99_10180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrhi03019
]
KDW99_10180
03400 DNA repair and recombination proteins [BR:
mrhi03400
]
KDW99_10180
Enzymes [BR:
mrhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KDW99_10180
Messenger RNA biogenesis [BR:
mrhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDW99_10180
DNA repair and recombination proteins [BR:
mrhi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KDW99_10180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ_Zn_bind
ResIII
HRDC
Motif
Other DBs
NCBI-ProteinID:
UTW01473
LinkDB
All DBs
Position
2152863..2154629
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AA seq
588 aa
AA seq
DB search
MNLKTLTLSRLGYSEYRPLQEEAIDALCAGQDVLLAAPTGGGKSLAYQAAGLMRNGVAVI
VSPLLSLMSQQVQELNKKGIRAKFLNSTLNPGEQDDLVWALRHQHIDLLYLSPEKLVQPS
VIGFLHSFDISLFAIDEAHCISQWGSFFRPEYSQLGQLKSSFPDVPIIALTGTVDQKTMT
TIQGSLQLNNCLVLRNSFDRTNIKIQIAQKRKAKQQILYFLHHEVPGETGIIYCRSRKKT
EELAFWLSDLGLPSLSYHAAMLEEDKQKNHKIFSEQLGTIMVATTAYGMGIDVAHVRFVV
HLDLPSSPESYFQEVGRAGRDGKPAKSLLLYGLQDMLQAQQLAALQPLSAESELQHLSSL
FRILEGRGCRRQNLLAHFDESIPACQHCDRCLSSKSEQNMTTASQKLLSLIYHTKGLQPF
SLLIQVLLGKKTKSVSAISAQSLALFGKGKELSEVQWKSVIRHLIAYDYITLGPSSIFTV
QINEKSRSVLQGKNQIIIPSEHYYPTLQEEQLAVDSLNWHKVLAWKYSHDKTDLSETQLR
LICLHKPKSVASLSRLTGLSKDKVADFADTLIKLIHDVDPEEADTLCP
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagacgctcacactttcacgtttaggctactctgaatatcgccctttgcaa
gaggaggcgatcgatgccttatgcgcaggacaggacgttttacttgctgcacctactggc
ggcggtaagtctttggcctatcaagccgctggattgatgcgaaatggtgttgccgtcatt
gtcagtccgttgctgtctcttatgtcccagcaggtacaagagttgaacaaaaaaggcatt
agagccaagttcctgaactctactttgaaccctggagaacaagatgacttggtttgggct
ttgcgacatcagcatattgacttactgtatttatctccagaaaaactggttcaaccatcg
gttataggttttcttcacagctttgatatttcactattcgctattgatgaagcccattgc
atttcacagtgggggagtttttttcgaccagagtacagtcaacttgggcaactaaaatct
tcatttcctgacgttcctattattgctctaactggcaccgttgatcaaaaaaccatgaca
acgattcaagggtcattgcaacttaacaattgcttagtattgcgcaatagcttcgaccgc
accaatattaaaattcaaattgcgcaaaaaagaaaagccaagcaacaaattttgtatttt
ttgcatcatgaggtccccggtgaaactggcataatttattgtcgctcacgaaaaaaaacc
gaagagcttgccttttggttaagcgatcttggcttgccaagtttgagctaccatgccgcc
atgttagaagaggacaaacagaagaatcataagattttttctgagcaactaggcacgatt
atggtggcgaccaccgcatatggaatggggattgatgttgcccatgtcaggtttgtggtt
catttagatttgcctagcagtccagagtcctattttcaggaagtgggacgtgcagggcgt
gatggaaaaccggctaaatctcttttactctacggcttacaagatatgctgcaagcgcaa
caattggcagctctgcagcctttatctgcagaaagcgagctacagcatttgagcagttta
tttcgtattttagaaggacgaggctgtagaaggcaaaatttgctagcgcattttgatgaa
agtattccagcttgccagcattgtgataggtgtctatcaagcaagtctgaacaaaatatg
acgacggctagccaaaagcttttgtctttgatttaccacactaaagggctacaacctttt
tcactgcttattcaagttttgctaggtaaaaaaaccaaatctgtttctgctattagcgct
caatcgctggctttatttggtaaaggaaaagagctgagtgaagttcagtggaaatcggtt
attaggcatttaattgcttatgattacattacacttggtccttcaagtatttttactgta
caaatcaacgagaaatcacgaagcgtactgcaagggaaaaaccaaattattatccctagt
gaacactattacccgactcttcaagaagagcagcttgcagtagacagtcttaattggcat
aaggttttggcttggaagtacagtcatgacaaaacagatcttagtgaaactcagcttagg
ttaatttgtttacataaaccaaaatctgtcgcttcgttaagccgtctaactggcttatca
aaagataaagtggcagattttgctgatacactcattaaactcatccatgatgttgatccc
gaagaggctgacactctatgcccttaa
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