Marinomonas rhizomae: KDW99_10555
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Entry
KDW99_10555 CDS
T08610
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mrhi
Marinomonas rhizomae
Pathway
mrhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDW99_10555 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrhi03019
]
KDW99_10555 (rne)
03009 Ribosome biogenesis [BR:
mrhi03009
]
KDW99_10555 (rne)
Enzymes [BR:
mrhi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KDW99_10555 (rne)
Messenger RNA biogenesis [BR:
mrhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KDW99_10555 (rne)
Ribosome biogenesis [BR:
mrhi03009
]
Prokaryotic type
rRNA processing factors
KDW99_10555 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UTV97751
LinkDB
All DBs
Position
2223443..2226649
Genome browser
AA seq
1068 aa
AA seq
DB search
MIRMLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGRITRIEPSLEAAFVDF
GADRHGFLPLKEISKTYFSKKSNHEGRINIKDVLSEGQEVIVQVDKEERGNKGAALTTFV
SLAGRYLVLMPNNPRAGGISRRIDGDDRSHLKEAMSGLNTPENGGLIVRTAGVGRSTEEL
QWDLDYLDTLWSSITKAASEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKSAYQDA
INFVMQVMPHFKSRIKMYTDSTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALVS
IDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVEN
RMKNALEADRARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESLAL
SVLRLIEEECSKERTAQIRAVLPVSVATFLLNEKRTNIAKIEKRNSVHIILVPNPHMETP
HFEVERIRDDSTVVTQNENSYNLVETPEQPPYEPRKANENVRPQAAVTSIAPKAPAPEHT
APVATPKVTKSTQNTQSKPSLLKRIMTALFGETQTKAKPKTVNKTSATTPSQNDRDRDTS
ASSKPNDKRVNRNKRNVKHQNADRDDSNTTEKNRSTRQSRREQAEAGTKGNNNNRRNNRG
NKQDAQEPRAEKQEAAVKAAPRQPQKEVPEVKERKRDRNDNRRRNGKLKDEALEATKLQE
QEDAALVEAAQNAEVESNENGDEPQRRSRRSRRSRRPQKEENSTQQENVESENDQATETA
AAKTEEVKPTTPEVKQTETESEVKSEEDVTTETISEDKYKTEQNVQTEKTVEAVEAVEAS
PADSKETTVETVKNESPEAKPTKPKMSVKAQMRKIEQQTTEAATEQTEEESNMTSKSEET
QTTATEATEEANATDKPIPEAEEAKTVTAEPVNVTEEVSTETQDADAVIVTTNQKETEST
DNTSEITEENAKTEEAKEVKSEETSSPSTRTPRRGRGKPATKQANTEAKAPVELPAAILA
QQEKLRLEQEEKRNAATSRRRASPGRVKNDPRIAREEKSESTSEANVE
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgattagaatgcttattaatgcaactcaacaagaagagttgcgcgtcgccctagtagac
ggacaacgtctatatgatctagacatcgaatccggttcacgcgaacagaagaagtcgaat
atatacaaaggtcgcatcactcgcattgagccgagtcttgaagctgcttttgttgacttc
ggtgcagatcgccacggttttctacctctcaaagaaatttctaaaacctacttctccaaa
aagtccaatcacgaaggccgaattaacatcaaagatgtgttaagtgaaggtcaagaagtg
attgttcaagtggacaaagaagagcgtggcaacaaaggcgctgctttgactacttttgtt
agcttggcgggtcgttatttggttttaatgcctaataacccacgtgctggcggtatatct
cgtcgtatcgacggcgacgatagatcacaccttaaagaagctatgtcaggcctgaacaca
ccagaaaatggtggattgattgttcgtactgcaggcgttggtcgttcaactgaagagctt
cagtgggacttggattaccttgatactttatggtcttctattactaaggctgcatctgaa
aagcctgctcctttcttaatctatcaagaaagcaacatcgtcatccgcgccattcgcgat
tatctacgcgaagacattggcgaagtattgattgatgagaaaagcgcttaccaagacgcg
ataaacttcgttatgcaagttatgccgcactttaagtcgcgcattaaaatgtatactgac
tccacaccgctgtttaaccgcttccagatcgaaactcagatcgaaacggctttccagcgt
gaggttcgcctaccttctggtggctcaattgttattgaccctacagaagcactagtgtct
atcgatatcaactcagcccgcgcaacgaaaggcggagatatagaagaaacagcactacag
accaatttagaagcggccgatgaaatagctcgtcaattgcgtctccgcgacatcggtgga
ttggttgttatcgatttcatcgatatgacaccagtacgcaaccaaaaagaagttgaaaac
cgcatgaaaaacgctctagaggcggatcgtgctcgtgttcaacttggtcgtatttctcgc
tttggcctattagaaatgtcacgccagcgtctgcgcccttctcttggcgaaaccagcggc
atcgtttgtcctcgctgtaatggccaaggatttattcgtgacgtggagtctctggcactt
tctgtacttcgccttattgaagaagaatgctccaaagaacgtaccgctcagatccgtgct
gtattaccggtatcagttgcgactttcctacttaatgaaaaacgtaccaatattgcgaaa
attgaaaaacgtaacagcgttcacattattcttgtgccaaatccacatatggaaacaccg
cattttgaagtagaacgtattcgcgatgacagcacagttgttacgcaaaacgaaaatagc
tacaacttggtggaaacacctgaacaaccgccttacgaaccacgtaaagcaaatgaaaat
gttcgcccacaagcagcggtaactagcattgctcctaaagcgccagctccagagcacacc
gcaccagtagcgacaccaaaggtaaccaagagcacgcagaatacacaaagcaagccaagt
ttgcttaaacgtattatgacggcactatttggtgagactcaaaccaaagcaaaacctaaa
accgttaacaagactagcgctacaacaccttcacaaaatgaccgtgatcgtgacactagt
gcatcaagcaagcctaacgataagcgtgtaaacagaaacaaacgtaacgttaagcatcaa
aatgcggatcgtgacgacagcaatacgactgaaaaaaatcgctctactcgtcaatcacgc
cgtgaacaggctgaagctggcacgaaaggcaataacaacaaccgtcgtaataaccgtggc
aacaagcaagacgctcaagaaccgagagctgaaaagcaagaagcggctgtaaaagcagct
cctcgccaacctcagaaagaggttcctgaagtcaaagaacgcaaacgcgatcgtaatgac
aaccgtcgccgcaacggcaaattaaaagacgaagcattggaagcaactaaactacaagag
caagaagatgccgctctagtagaagcagctcaaaatgccgaagtggaaagcaacgaaaat
ggcgatgaacctcaacgtcgttcacgtcgctcacgtcgttcgcgtcgcccacaaaaagaa
gaaaacagcacacaacaagagaatgttgaatctgaaaatgatcaagcgacagagactgca
gctgcaaaaactgaagaagtaaaaccaaccactccagaagttaagcagactgaaacagaa
agtgaagttaaatcagaagaagatgtgacaacagaaaccatttcggaagacaaatacaaa
actgagcaaaatgttcagactgagaaaactgttgaagctgttgaagctgttgaagcatca
cctgcagattcaaaagaaacaacagtagaaaccgttaaaaacgagtctcctgaagcaaaa
ccaacaaaacctaagatgtctgtaaaagctcagatgcgaaaaattgagcaacagacaact
gaagcagcaacagagcaaactgaagaagagtcaaacatgacttccaaatcagaagagact
caaacaactgctacagaagctacagaagaagccaatgccacggataagccaatacctgaa
gcagaagaagctaagactgttactgcagaaccagtcaatgtgacagaagaagtatctact
gaaacacaagatgctgacgctgttatagtgacgacaaatcagaaagagaccgagtctact
gacaacacttctgagataactgaagaaaacgctaaaacagaagaggcgaaagaagtaaaa
tcagaagagacatctagtccttccactcgtactcctcgtcgcggacgtggcaaaccggct
accaaacaggcaaatacagaagctaaagcgcctgtagaattacctgctgccattttagcc
caacaagaaaagctacgcttagaacaggaagaaaaacgcaatgctgcgacatctcgtcgt
cgcgcatcccctggaagagttaaaaacgacccgagaattgcaagagaagaaaaatcagaa
tcaacttcggaagctaacgtagaataa
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