Marinomonas rhizomae: KDW99_12720
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Entry
KDW99_12720 CDS
T08610
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
mrhi
Marinomonas rhizomae
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
mrhi01011
]
KDW99_12720
Enzymes [BR:
mrhi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
KDW99_12720
Peptidoglycan biosynthesis and degradation proteins [BR:
mrhi01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
KDW99_12720
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Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM_RLK
LysM3_LYK4_5
LysM2_CERK1_LYK3_4_5
DUF3071
SLT_2
DUF5381
Motif
Other DBs
NCBI-ProteinID:
UTV98133
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All DBs
Position
2682957..2684615
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AA seq
552 aa
AA seq
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MIYKFLWVCLASLALSACQTASKIERQNTSSDLLESSAEVDADADTVEADTEQLGFIDTV
PPVDSTVEEEDVKAEPVIANSKPRAPEDIWQRIREGYQLNLDIDRPRLSSQLRWFSSHPS
YLDRVSKRGERYLYYIVDELEKAGIPTEIALLPIVESGFDPFGYSHGRASGPWQFIPSTG
QMYGLDQTWWYDGRRDIIGSTQAAIAYLTRLHKMFDGDWLHALASYNSGEGTVLRAIRKN
KKAGKPTDFWSLDLPRETRAYVPKLIALAKIIKNPEKYNYSTYFIPNKPYFDVVNIGGQL
DLAQAAEMADVSIDEVYLLNPGFNQWATSPDGPHRLLMPVSKAKQFRTKLAEIPSKERVT
WVRYTVKAGDNLLLVAKQHNTTVNVLQNVNKISSTMIRVGQELMIPVAGNDIESYTLSSH
QRLLAKQSRAPNRNRIKINYTVNSGDSLWLISNKYGTDSKTLARWNNMGLADPLIPGKKL
VVWLKPKQSENSTRSVMKKVVYTIRSGESLALVANKFKVSVNDIRDWNPKVSSKKYVQPG
DKVTLLVNVVGG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgatatataaatttttatgggtttgcctggcaagcctagcgctaagcgcatgccaaacc
gcctctaaaatagagcgacaaaacacctcaagtgatttgctagaatcttcagcagaagta
gatgctgatgctgatactgtcgaagcagacacagaacaacttggttttatcgataccgtc
cctccagttgactcaactgttgaggaagaagacgttaaagcagaacctgtcattgcaaac
agcaaaccaagagcgccagaagatatttggcaacgcatccgtgaaggataccagctcaac
ctagatatagatcgccctcgtttatcatcccagttacgttggtttagctctcatccttct
tacttagacagagtatcaaagcgcggtgagcgctatttgtattacattgtcgatgagcta
gagaaagcaggcattccaactgaaattgctttattgcctatcgtcgaaagtggctttgat
ccttttggttatagccatggccgcgcctcaggcccttggcaattcattccctctacaggg
caaatgtatgggttagaccaaacatggtggtatgacggtcgccgtgacattattggttca
actcaagccgctatcgcctatttaactcgactgcacaaaatgttcgatggtgactggtta
catgctttagcatcctataattcaggtgaaggtacggtattaagagctattagaaaaaac
aagaaagcaggcaagccaactgatttttggtcactagacctacctagagaaacacgtgcg
tacgtgccaaaattgatcgctctagcaaaaatcattaaaaatccagaaaaatacaattac
tcgacttacttcattcctaacaaaccgtattttgatgtcgtaaatatcggcgggcaactc
gatttagcccaagcagccgaaatggcagacgtaagcatcgatgaagtctatttactaaac
cctggttttaaccaatgggccacatctccagatggaccacacagattactaatgcctgtg
tctaaagcaaaacaatttagaactaagctggctgaaataccgagtaaagaacgagttact
tgggtgcgttacacagtaaaagcgggcgataacttacttctcgttgccaaacagcacaac
accaccgtcaatgtgttgcagaacgtgaataaaatatcctcgaccatgatccgtgttggg
caagaactaatgattcctgtcgctggcaatgacattgaaagctatacgctaagctctcat
cagcgattattggctaaacaatctcgcgcaccaaatcgcaatcgcataaaaataaactac
accgtgaattctggcgatagtctatggttaatctcaaacaaatatggcacagacagcaaa
acattggctcgctggaataatatgggacttgcagacccgctcattcctggcaagaagctc
gttgtgtggttaaagcctaaacaatcagagaacagcactcgtagtgtaatgaagaaggtg
gtctacactattcgctctggtgagtcattagctcttgtcgctaacaaatttaaagtatca
gtcaatgatattcgtgattggaacccgaaggttagtagtaagaaatatgtccaacctggc
gataaagtcactttactcgtcaatgtcgttggtgggtaa
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