Marinomonas rhizomae: KDW99_16420
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Entry
KDW99_16420 CDS
T08610
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mrhi
Marinomonas rhizomae
Pathway
mrhi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KDW99_16420 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrhi03021
]
KDW99_16420 (rpoD)
Transcription machinery [BR:
mrhi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KDW99_16420 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UTV98823
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Position
3484728..3486566
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AA seq
612 aa
AA seq
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MPDTQQSRLKELISKGKEQGYLTFSEVNDHLPDDLSDPEQVEEIIAMINDMGITVSEVAP
DKDNLLMEEGDATDEAAAEEAAAALAAVEGDITRTTDPVRMYMREMGTVELLTRAGEIAI
AKRIEEGTREVMAAISYFPGAVDVLLDAYAKVQEEEGRLSDIFSGFIDGDGEEPVFEEAV
TEEPAIEEDTVDSDDDDDDSEDSEEETDNGPDPEETALRFNDISRIYEELKVLLANSNRQ
DPAVKSKQEELSISFAPIKLVPKLFDDLIDRVRSRMEKVRDQERLIMQVCVRKAGMPRTE
FLKRFPSNETNPDWLKEQIASGADYAASLEENEAEFMRSQRKLRAVSKDTGLTIAELKEI
NRRISIGETRARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREATPE
ELAARMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDDGAESPIDIATIEGLR
ESTTMVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEHLRSFLDE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgccagacactcaacagtcacgtctcaaagagctgatctccaagggtaaagaacaaggt
tacctaactttttccgaagttaacgaccacctccctgatgacctttcagacccggagcaa
gtagaagaaatcattgccatgatcaacgacatgggcattacggtttctgaagttgcacca
gataaagataaccttcttatggaagaaggtgacgctacagatgaagctgcagcggaagaa
gctgccgccgccctagccgcagtagaaggtgatatcaccagaacaacggatccagtgcgt
atgtatatgcgtgaaatgggtactgttgagctattgactcgtgcgggcgaaattgcgatt
gccaagcgtatcgaagaaggcacacgcgaagtcatggcggctatctcttactttccaggt
gcggtagacgtactactagatgcttatgcaaaagtgcaggaagaagaaggccgtctaagc
gatatatttagcggtttcatcgatggcgatggtgaagaacctgttttcgaggaagccgta
acagaagagcctgcgatcgaagaagacactgtagacagtgatgacgacgatgatgattct
gaagacagcgaagaagaaaccgataacggtcctgatcctgaagaaacagcactgcgcttc
aatgatatttcacgcatttacgaagagctaaaagtcttgctagcaaatagcaatcgacaa
gatccagcggtaaagagcaagcaagaagaattaagtatcagctttgctcctatcaagctt
gtacctaagctgtttgatgatttaattgatcgtgttcgttcgcgtatggaaaaagtacgc
gaccaagagcgccttatcatgcaagtgtgtgtacgcaaagcgggcatgccaagaaccgag
tttttgaagcgctttccaagcaatgagacaaatcctgattggcttaaggagcaaattgct
tctggtgctgattacgctgcatctcttgaagaaaacgaagccgagtttatgcgtagccag
cgcaagcttcgtgctgtttcaaaagacactggtctgaccatcgcagaactaaaagaaatc
aaccgtcgcatttctatcggggaaactcgagctcgtcgagctaagaaagaaatggttgaa
gccaacttacgtttggttatctctatcgcgaaaaagtacaccaaccgtggcttgcagttc
ttggatcttatccaagaaggtaatattggcctgatgaaagccgttgataaatttgaatat
cgtcgtggttataagttctcgacttatgctacttggtggattcgtcaggcaatcactcgc
tctattgccgatcaggctcgtacaatccgtattccagtacacatgattgaaacgattaac
aaactgaatcgcatctctcgtcagatgcttcaggaaatgggacgcgaagcaacgcctgaa
gagttggctgctcgcatggacatgccagaagataaaattcgtaaagttcttaagattgct
aaagaaccgatctcaatggaaacaccaattggtgatgatgaagattctcacctaggtgac
tttattgaagacgatggtgctgaatctcctattgatatcgcaactattgaaggcttacgt
gaatcaacaacgatggtacttgctggtctaaccgctcgtgaagccaaagtgttacgtatg
cgtttcggtatcgatatgaacaccgaccatactcttgaagaggttggtaaacagttcgat
gttactcgtgagcgtattcgtcaaatcgaagccaaagcactacgcaaactacgtcaccct
agccgttcagagcacctaagaagcttcttagacgaatga
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