Marinomonas rhizomae: KDW99_16470
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Entry
KDW99_16470 CDS
T08610
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mrhi
Marinomonas rhizomae
Pathway
mrhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDW99_16470 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrhi03019
]
KDW99_16470 (pnp)
03016 Transfer RNA biogenesis [BR:
mrhi03016
]
KDW99_16470 (pnp)
Enzymes [BR:
mrhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KDW99_16470 (pnp)
Messenger RNA biogenesis [BR:
mrhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KDW99_16470 (pnp)
Transfer RNA biogenesis [BR:
mrhi03016
]
Prokaryotic type
tRNA degradation factors
KDW99_16470 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
UTV98832
LinkDB
All DBs
Position
complement(3495607..3497715)
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AA seq
702 aa
AA seq
DB search
MSITTKTFQFGNDTVTLETGRIARQATGAVLCTIGDAQVLATVVGAKSAKPGQDFFPLSV
HYQERAYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTN
TNLDADIAAMLATSAALTISGIPFNGPIGAARVGFNDESGYVLNPSYSDLDGSLLDMVVA
GTKDAVLMVESEAQELTEDEMLGAVLYAHKEMQSAISAITEFAAECAKPRWDWVADTANV
SLTDALQSGYAAQIEEAYGISEKMARYAQLGVVRNAAVAALVTEEGEFSEADVTGAFSKL
EKRIVRRRVIDGKPRIDGRDNKTVRPIDVEVGLLSKTHGSALFTRGETQAIATCTLGTSR
DSQMTDGLTGESKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPSEDE
FPYTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLIKEDDGFAVLTD
ILGDEDHLGDMDFKVAGTAEGITALQMDIKIEGINEEIMDIALSQALEARTHILREMAKV
IGYARPEVSPNAPSMATIKIDPEKIRDVIGKGGATIRSITEQTGASIDLDDDGTVRIYAA
DKAASDAALLKIHEITAEAEVDKLYKGKVVRLAEFGAFVNILPGKDGLVHISQIAEERIR
AVTDFLSEGQEVIVKVLDVDARGRIKLSMKDVTEEEKAAYTE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagtattactactaaaacttttcagttcggtaacgataccgtaacgctagaaacaggc
cgcattgctcgtcaagcaacaggtgctgttctttgtacaattggtgatgcacaagtactt
gctactgttgtgggtgctaaatcagcgaaacctggtcaagacttcttcccattatctgtt
cattatcaagagcgtgcttacgctgttggtaaaattccaggtggtttcctaaaacgtgaa
ggccgtccttctgaaaaagaaacgttaacttctcgtttgatcgaccgtccaattcgtcca
ttgttccctaagggattcatgaacgaagttcaggttgtttgtacagtaatgtctactaac
actaatttagacgctgatattgcggctatgttagcaacatctgcagcattgactatttct
ggtatcccattcaatggtcctatcggtgcagctcgtgttggttttaacgacgagtctggt
tacgttcttaacccaagctattctgatctagatggttctttgctagacatggttgtagcg
ggtacgaaagacgcagtattgatggttgagtctgaagcgcaagagcttacagaagacgaa
atgctaggtgctgttctttatgctcataaagaaatgcaatcagctatctctgctattact
gaattcgcagctgagtgcgctaagcctcgctgggattgggttgctgatacagcaaacgtt
tctttgactgatgcacttcagtctggttacgcagctcaaatcgaagaagcatacggcatc
agtgaaaaaatggctcgttacgctcaactaggtgttgttcgtaatgctgctgttgcggcg
cttgttactgaagaaggcgagttctctgaagcagatgttacaggtgctttctccaaactt
gaaaaacgcatagttcgtcgtcgtgttatcgatggcaaacctcgtattgatggtcgtgac
aacaaaactgttcgtccaattgacgtagaagtgggtttgctaagcaaaactcatggttct
gctttgtttacacgtggtgagactcaggcgattgcaacttgtactctaggtactagccgt
gactcacaaatgactgatggtttgacgggcgaaagcaaagacagcttcatgcttcattat
aacttccctccttactctgtaggagagtgtggtcgtatgggtggtgttggtcgtcgtgaa
attggtcacggtcgtctagctcgtcgtggtgttcaagcggtattgccttctgaagatgaa
ttcccatacacaattcgtatcgtgtcagagatcactgaatctaacggttcaagctctatg
gcgtctgtttgtggtgcgtctttgtctatgatggatgcgggtgttcctctgaaagcacca
gttgcgggtatcgcaatgggtcttatcaaagaagacgacggctttgctgtattgactgat
atcttgggtgatgaagatcatcttggcgatatggactttaaagtagcgggtacagcagaa
ggtatcactgcgcttcaaatggacatcaaaatcgaaggtatcaacgaagaaattatggac
atcgccttgagccaagcgcttgaagctcgtacgcatatccttcgtgaaatggcgaaagtt
attggttacgctcgtccagaagtttctccaaatgcgccttctatggcaacgatcaaaatt
gatcctgaaaaaatccgtgatgttatcggtaaaggcggcgcaacaatccgttctattact
gagcagacgggcgcttctatcgatctagatgacgatggtactgttcgtatctacgctgca
gacaaagcggcttctgatgctgccttgcttaagattcatgaaatcactgcagaagcagaa
gtggataaactttacaaaggtaaagttgttcgcctagctgagtttggtgcattcgtaaat
atcttgccgggtaaagacggtttggttcacatctctcaaattgctgaagaacgtattcgt
gcggtaaccgacttcctttcagaaggccaagaagttatcgttaaagtactagatgttgat
gctcgtggtcgtatcaagctttctatgaaagatgtaactgaagaagaaaaagcagcttac
actgagtaa
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