Marinomonas rhizomae: KDW99_18215
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Entry
KDW99_18215 CDS
T08610
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
mrhi
Marinomonas rhizomae
Pathway
mrhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDW99_18215 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrhi03019
]
KDW99_18215 (pcnB)
Enzymes [BR:
mrhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
KDW99_18215 (pcnB)
Messenger RNA biogenesis [BR:
mrhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KDW99_18215 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
Motif
Other DBs
NCBI-ProteinID:
UTV99155
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All DBs
Position
3893170..3894627
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AA seq
485 aa
AA seq
DB search
MLTGLKSLVRKATSLFASPKAQTYPIIIPRSDHSLSRQDLSPNAVKVLYRLNKAGFDAFL
VGGCVRDHLIGIEPKDFDVVTNATPEEVHTIFSNSRLIGRRFKLVHVTFGREIIEVSTFR
ANSAQNDSNDDNAQNTSLKGKDSARSAHGIVLRDNVYGNIEEDAERRDFTFNALYYNVQD
FSIHDYCGGLKDIENKQIRIIGDARQRYQEDPVRMLRAIRFAGKLGFELEADTAAPIKEM
AHLLDHIPPARLFEEVLKLLGSGNGIDTFHLLRQYGLFRYLFPDAEALLQSGWKRHDIDP
EAFILQGLKNTDDRIQSGKTTAPYFLYAVLLWPSVALRHEEFQAQGMPATPALHQAANMV
LDNQVASTAIPRRFSTPMREIWDMQYRLPKRYGKRAFLLLEHPRFRAGFDFLLIRELSGT
DLDGLGDWWEKFQHGTESQQRDLIKSIDSFTKDKDGPKKRRPRRRRKSNGNTSETAKPQS
ETFDE
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgcttacaggattaaaatctctggtacgtaaagctacctcactgtttgcctctccaaag
gcacagacttaccctattatcatccctcgcagcgatcacagcttatctcgacaagactta
agcccaaatgccgtcaaagtattgtatcgcctaaataaagcgggcttcgacgcctttctt
gttggtggctgcgttcgagaccatcttattggcattgagcctaaagattttgacgttgtt
accaacgcgacccccgaagaagttcacaccatattctcaaactcaagactcattggccgc
cgattcaaattggtccatgtcacgtttgggcgcgaaatcatcgaagtctcaacatttaga
gccaattccgctcaaaacgacagcaatgatgacaacgcacagaacacctctttgaaaggc
aaagactccgctcgatccgcccatggcatcgtcttgcgtgataatgtctatggcaacatt
gaagaagatgcagaacgccgagacttcacttttaacgctttatattacaatgtccaggac
ttcagtattcacgattactgcggtggcctgaaagacattgaaaataaacagattcgcatc
attggtgatgctcgtcagcgttatcaagaagaccctgttcgcatgctgcgcgctattcgc
tttgccggtaaactaggatttgaattagaagccgacactgcggcgccaatcaaagaaatg
gcgcatcttttggatcacattccacctgcacgcctatttgaagaagtattaaaactgctt
ggcagtggcaatggcattgatacttttcatttacttcgccaatacggtttgttccgctac
ttatttccagacgctgaagccttattgcaaagtggttggaagcgtcacgacatcgaccct
gaagcgttcattctgcaaggcctaaaaaacaccgacgaccgcatccaaagcggaaaaacc
actgcaccatatttcttgtatgctgtactgctttggcctagcgttgcacttcgtcatgaa
gaatttcaagcgcagggcatgccagcaacaccggctttgcaccaagccgctaacatggta
ctagacaaccaagtcgcatccaccgctatcccgcgccgattctccacgccaatgcgtgaa
atctgggacatgcagtaccgactaccaaagcgctacggcaaacgagcgtttctactactt
gaacatcctcgcttccgtgcgggtttcgacttcttgttgattcgagaactaagcggtact
gacttagatggattgggcgattggtgggagaaattccagcacggcacagaaagccaacaa
agagacctgatcaaaagtatcgattcattcacgaaagacaaggatggccctaaaaagcgc
cgccctcgtcgtcgtagaaagagcaatggcaacacatccgaaacagctaaaccacaaagc
gaaacttttgacgagtaa
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