Marinomonas rhizomae: KDW99_19420
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Entry
KDW99_19420 CDS
T08610
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mrhi
Marinomonas rhizomae
Pathway
mrhi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KDW99_19420 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrhi03021
]
KDW99_19420 (rpoC)
03400 DNA repair and recombination proteins [BR:
mrhi03400
]
KDW99_19420 (rpoC)
Enzymes [BR:
mrhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KDW99_19420 (rpoC)
Transcription machinery [BR:
mrhi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KDW99_19420 (rpoC)
DNA repair and recombination proteins [BR:
mrhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KDW99_19420 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UTV99382
LinkDB
All DBs
Position
complement(4146440..4150642)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLGLLKSQGQSDEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLIMDMTLRDIERVLYFESFIVIDPGMTTLEKGQLLNDEQYFEALEEFGDEFDARM
GAEAVQMLLRDLDMPVEINSMREELNSTNSETRIKKLSKRLKLVEAFYHSGNNPEWMVLD
VLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPS
LRLHQCGLPKKMALELFKPFIFSKLELRGMATTIKAAKKMVERETPEVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMAFSDIKEVHRAYGAK
QVELHAKVKVRISQVDTTLEGDKVPSTFIADTTVGRALLFDIVPDGLPFSVVNQTMKKKA
ISNLINECYRKVGLKESCIFADQLMYTGFAYATASGSSVGVDDFVIPPEKAEIIAKAEAE
VKEIEYQYADGLVTQGEKYNKVIDLWSRTNETVTEAMMKNLAKEMTVNKAGETVEQQSFN
SVYMMADSGARGSVAQMRQLGGMRGLMAKPDGSIIETPITANFREGLSVLQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEVDCGSTNGISVAAMIEGGDVVVPLGHRVL
GRVVAQDVIDGKGDFVLAAGTLIDEHDVRTIEAAGVDEMIIRSVITCNTRHGVCAKCYGR
DLARGHQVNIGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAIDSVQVKSAGTVRFN
KMKSIERHTGHLVVASRSSELAIADEAGREKERYKLPYGAVLSVREGDQVTAGQIVANWD
PHTHPIVSEMEGRLEFSGMEENVTIRRQSDEMTGLTTIEVMEMRDRPAAGKDIRPMIAVV
DAEGNPVLIPGTESPVQYMLPEKALLSLDHGATVKSGEVLARIPQESIGNKDITGGLPRV
ADLFEARRPKDPAVMAETSGVVSFGKETKGKIRLVITPQNGDDPVETLIPKWRQINIFDG
EEVAKGEIIADGPLSPHDILRLQGVEALADYITNEVQEVYRLQGVVINDKHIEVIVNQML
RKVEVGESGDTDLIQGDQVEFTHLLDANEKAEAENKFPAKFERVLLGITKASLATESFIS
AASFQETTRVLTEGAVTGKKDHLRGLKENVVVGRLIPAGTGLAYHNERKRKKELALAAKE
GSSTVSASDVEEALSAALKD
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttattaggtcttctaaaatcacagggacaatctgacgagtttgatgcgatc
cgcattggcttggcgtcaccagatatgattcgttcatggtcttacggtgaagttaagaag
ccagagaccatcaactaccgtactttcaaaccagaacgtgacggtttgttctgtgcaaaa
atctttggtcctattaaggactacgaatgcttgtgtggtaaatataagcgtttgaaacac
cgcggtgttatctgtgagaagtgtggcgttgaagtggctctgtctaaagtgcgtcgtgaa
cgcatgggtcacattgagcttgcatcgcctgttgctcatatttggttcttgaaatctcta
ccgtcacgtatcggtcttatcatggatatgacgttgcgtgatattgagcgtgttttgtat
tttgaatctttcatcgtgattgatccaggtatgacgacgcttgaaaaaggccagttgcta
aatgacgaacagtattttgaagcgctagaagaattcggtgacgaatttgatgcccgtatg
ggtgcggaagcggttcaaatgttgcttcgcgatttggatatgcctgtagaaattaacagc
atgcgtgaagagctaaacagcacaaattctgaaactcgcattaagaagctttctaagcgt
cttaagctagttgaagcattctatcattctggtaacaacccagagtggatggtgctagat
gtattgcctgttcttccgccagatcttcgtccattggtaccacttgagggtggccgtttt
gcgacgtctgatttgaacgacctttatcgtcgtgtgattaaccgtaacaaccgtctaaag
cgcctgttagagctttcagcaccagatattatcgtacgtaacgaaaagcgtatgttgcaa
gaatctgttgatgctttgcttgataacggtcgtcgtggtcgcgctattactggttctaac
aagcgtccattgaaatctttggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaagcgtgttgactattctggtcgttctgtaatcacagtaggtccatca
ctgcgactacatcagtgtggtctacctaagaaaatggcacttgagttattcaagccattc
attttctctaagcttgagcttcgtggcatggcgacgacgatcaaagcagcgaagaaaatg
gttgagcgtgaaacgcctgaagtgtgggatatccttgatgaggttatccgtgaacatcca
gtgatgttgaaccgtgcgccaacacttcaccgtttgggtatccaagcgtttgaaccaatg
ttgatcgaaggtaaagcgattcagttgcacccattagtgtgtgcggcatacaacgccgat
ttcgatggtgaccaaatggcggttcacgttccgttgactatcgaagcgcagctagaagct
cgtgctttgatgatgtctacgaacaacatcctatcaccagcaaacggcgagccgatcatc
gttccttcccaggacgttgtattgggtctgtactatatgactcgagagaaaatcaatgcc
aagggtgaaggcatggcgttttctgacatcaaagaagtacaccgtgcatatggtgcgaaa
caagttgaattgcatgccaaagtaaaagtacgtatcagccaagttgatacaacgcttgaa
ggcgacaaagtgccgtctactttcattgcagatacaacggttggtcgtgctttgttgttt
gatatcgttcctgatggcctaccgttctccgtggttaaccaaaccatgaagaaaaaggcg
atctctaacttgatcaacgagtgttaccgtaaagtgggcttgaaagagagctgtatcttt
gcagaccaattaatgtacacaggttttgcttacgcaacagcgtctggctcttctgttggt
gttgatgactttgttatcccgccagagaaggcagagatcattgctaaagcagaggcggaa
gttaaagaaatcgaataccaatatgcagatggtcttgtaactcaaggcgagaagtataat
aaagtaatcgatttatggtctcgtactaacgaaactgtaactgaagccatgatgaaaaac
ttggcaaaagagatgactgtcaacaaagcaggtgaaacggttgaacaacaatctttcaac
tctgtatatatgatggccgactctggcgcccgtggtagtgttgcgcagatgcgtcagcta
ggtggtatgcgtggtctgatggcgaagccagatggatccatcatcgaaacaccaatcact
gcgaacttccgtgaaggtttatcagtacttcagtactttacctctacacacggtgctcgt
aagggtctagctgatacagcattgaaaacagccaactctggttacttgactcgtcgtcta
gtagatgtagcgcaggatttggttatcactgaagtagattgtggttctacaaacggtatt
tccgttgcagccatgattgaaggtggtgatgtggtcgtgccgttaggtcatcgcgtattg
ggtcgtgtagtagctcaagacgttattgacggcaaaggcgatttcgttcttgcagctggt
actttgattgacgagcatgatgttcgtactattgaagcggctggtgtggatgaaatgatc
attcgttccgttatcacatgtaatacgcgtcatggtgtatgtgctaagtgttacggtcgt
gatcttgctcgtggtcatcaggttaacatcggtgaagcgattggtgttgttgcagcacag
tctatcggtgagccaggtacacagttgacgatgcgtacgttccacatcggtggtgcggca
tctcgagcgtctgcgattgatagtgttcaggtgaagagtgcgggtacggtacgtttcaat
aaaatgaagagtatcgagcgccacacaggtcatctagtcgttgcatctcgttcttctgaa
ttggcaattgctgatgaagctggtcgtgagaaagagcgttataagcttccttacggtgcg
gtattgagtgttcgtgaaggtgatcaagttactgcgggtcaaatcgttgctaactgggat
ccacatacacacccaatcgtatctgagatggaaggtcgtcttgaattcagcggtatggaa
gagaacgttactattcgtcgtcaatctgacgaaatgacgggcttgactacgattgaagtg
atggaaatgcgtgaccgtcctgcggctggtaaagacatacgtccgatgattgccgttgtt
gatgcagagggtaatcctgtattgattcctggtactgaatcaccagtacagtacatgctt
cctgaaaaagcattgttgagcttagatcatggcgcaacagtgaaatcaggtgaggttctt
gcacgtattcctcaagaatctatcggtaacaaagatattaccggtggtttgccacgagtg
gcagatctattcgaagcgcgtcgtccgaaagatccagctgttatggcggaaacgagcggt
gtggttagcttcggtaaagaaacaaaaggtaaaattcgtttggttatcacacctcaaaat
ggtgatgacccagtcgagactttgattcctaaatggcgtcaaatcaacatctttgatggt
gaggaagtggctaaaggtgagattattgccgacggtcctttgagccctcatgatattttg
cgtcttcaaggtgtagaggctttggccgattacatcacgaatgaagtgcaagaagtttac
cgtttacaaggcgtagtaattaacgataagcatattgaagttatcgttaaccaaatgttg
cgtaaagtagaggttggtgagtctggagatacggatcttatccaaggtgatcaggttgag
tttactcatctgttagatgcaaacgaaaaagcagaagctgagaataagttcccagccaag
tttgagcgtgtgcttctaggtatcactaaagcttctttggctactgagtcctttatatca
gcagcatctttccaagaaacaactcgagttcttacggaaggtgcggtaactggtaagaaa
gatcacttacgtggcttgaaagaaaacgttgtagtaggtcgcttgataccagctggtaca
ggtttggcttaccacaatgagcgcaagagaaagaaagagcttgcgctagcagcgaaggaa
ggaagttcgacagtaagtgcatcagatgtggaagaagcattgagtgcagcactgaaagac
tag
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integrated database retrieval system
