Marinomonas rhizomae: KDW99_19425
Help
Entry
KDW99_19425 CDS
T08610
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mrhi
Marinomonas rhizomae
Pathway
mrhi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KDW99_19425 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrhi03021
]
KDW99_19425 (rpoB)
03400 DNA repair and recombination proteins [BR:
mrhi03400
]
KDW99_19425 (rpoB)
Enzymes [BR:
mrhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KDW99_19425 (rpoB)
Transcription machinery [BR:
mrhi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KDW99_19425 (rpoB)
DNA repair and recombination proteins [BR:
mrhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KDW99_19425 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
UTV99383
LinkDB
All DBs
Position
complement(4150708..4154808)
Genome browser
AA seq
1366 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPPVLDVPYLLAIQLESYRNFLQEGKSLAERGELGLHGAFKSV
FPMVSFSGNAALEYVDYRLGKPVFDVKECQLRGVTYAAPLRVRVRLIIYDKESSNKAIKD
IREQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLHSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPATILLRALGYGTEQILDTFFESTRFYLKRDG
FEMDLIANRLRGETALFNIADANGELIVEEGRRITAKHIRVMEKSGLERLSVPLEYMLGK
VTAKNLVHPSTGELIAEANTELSVDLLEALVSSGITEVETLYTNDLDNGPFISDTLRIDP
TSNQLEALVEIYRMMRPGEPPTKESAEGLFQGLFFSEDRYDLSGVGRMKFNRRLGREEDT
GAGVLDNDDIVAVLKTLLDIRNGNGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAEADGLMPQDLLNAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSTYARTNSYGFLETPYRKII
DGKMTDETVYISAIDEAKYVIAQASANVDAEGRLVDELVQVRHMHETTLIPKEKVNLMDV
SPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPVVGTGMEKNVAKDSGVC
IVANRGGVIESVDASRIVVRVNSEETIAGEAGVDIYNLTKYVRSNQNTCINQRTLVMKGE
KVASGDIMADGPSVDMGDLALGQNMRIAFMPWNGFNFEDSILVSERVVEEDRFTSIHIQE
LTCVARDTKLGPEEITADIPNVGEGALSKLDQSGIVYIGAEVEPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSQRVKTGTRGTVIDVQVFTRDGIEKDDRAKFIEKSQLDQ
VRKDLNEEFRIVEKATFERLAEALIGQQAEGGPSLARNAIITEEYLANLDHPEWFKIRVA
NEEASEQLEKAQAALIERRKELDAKFEDKKRKLQTGDDLAPGVLKIVKVYVAIKRRIQPG
DKMAGRHGNKGVISKIMPVEDMPYDENGDPVDIVLNPLGVPSRMNVGQVLETHLGAASKG
LGRKINEMLVVEREKAEAVAELRSFLDEIYNGYEGDLRCARTEDLDSFTDEEILTLASNL
TGGVPMASGAFDGAKEAEIKRMLRLAGINESGQVKLFNGRTGDAFERPVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELENE
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgtaaggatttcggtaaactgccgccc
gttttggatgtgccatacttgctggcaattcagcttgaatcctaccgtaattttctgcaa
gaaggtaaaagccttgcagagcgtggggaattaggtctgcatggggcctttaaatctgtc
tttccaatggtcagcttttccggcaatgcggcgctagaatacgtcgattaccgtttaggc
aagccagtttttgatgttaaagagtgtcagttgcgtggtgttacttacgcggcaccttta
cgtgttcgtgtacgactaattatttatgataaagagtcgtccaacaaggcaatcaaagac
attcgcgagcaagaagtctacatgggcgaaattccgcttatgacagacaatggtaccttt
gtaattaacgggactgagcgtgttattgtatctcaattgcatcgttctcctggtgtgttc
ttcgaccacgatcgtggtaagacacactcttcaggcaagttactacattctgctcgtatt
attccttaccgcggttcatggttggacttcgagtttgatccaaaagattgcgtatttgtt
cgtattgaccgtcgtcgtaagttgccggcaacgattttgttgcgcgccttgggttacgga
acagagcaaatcctagatactttctttgaatctacgcgtttctatttgaagcgtgatggt
tttgaaatggatctaattgcaaatcgcttacgtggcgagactgcactgtttaatattgct
gatgctaacggcgaactgatcgtagaagaaggtcgtcgtattactgctaagcacatccgc
gtgatggaaaaatcaggtcttgagcgcctatctgtgccgcttgagtacatgcttggcaag
gtaacagcgaaaaacttagttcatccttcaacgggtgagttgattgcggaagcaaacact
gagttgtctgttgatttgctggaagccttagtttcttctggtattactgaagttgaaacg
ctttatacgaacgatttggacaatggtccatttatttctgacacgcttcgtattgaccca
actagtaatcagttagaagctctagttgaaatctatcgcatgatgcgtcctggcgagccg
ccaaccaaagaatctgctgaaggcttattccaaggattgttcttctctgaagatcgttat
gacttgtctggcgttggtcgaatgaagttcaaccgccgcttgggtcgtgaagaagatacg
ggtgctggcgttcttgataacgacgacattgttgctgttcttaaaaccttgcttgatatc
cgtaacggtaacggcatggttgatgatatcgatcacttgggtaaccgtcgagttcgttct
gttggcgaaatggccgagaaccaattccgtgttggtcttgttcgtgttgagcgtgcagtg
aaagagcgtttgtcaatggcggaagctgatggccttatgccgcaagatcttttgaatgcg
aagccagttgctgctgctattaaagagttcttcggttcaagccagttgtctcagtttatg
gaccaaaacaacccgctatctgaagtaacgcataagcgtcgtgtttcagcgttagggcct
ggtggtcttacgcgtgaacgcgcaggctttgaagtacgtgacgtacacgctactcactat
ggccgtgtttgtcctatcgaaacacctgaaggtccaaacattggtttgatcaactcgcta
tctacttatgcgcgtactaacagctacggcttcttagaaacgccataccgtaagattatt
gatggcaagatgactgatgaaacagtttatatctctgcgatcgatgaagcgaaatacgtt
attgcccaagcgtctgcgaatgttgatgcggaaggccgtttggttgatgagttggttcag
gtgcgtcatatgcacgaaacgactttgattccaaaagaaaaagtaaacctaatggacgtg
tcacctcgtcaggttgtttctgttgcggcatctttgatcccgttcctagagcacgatgat
gctaaccgtgcattgatgggatcgaacatgcagcgtcaagccgtaccgacacttaaggct
gataagcctgtagttggtactggtatggaaaaaaatgtagcaaaagactctggtgtttgt
atcgttgctaatcgcggcggtgtgattgagtctgttgatgcgagccgtatcgttgtacgt
gtgaactcagaagaaacaattgctggtgaagcgggtgtagatatctacaacctgactaaa
tacgtacgttctaaccagaacacatgtattaatcagcgtactttggtaatgaagggtgag
aaggttgcttctggcgatattatggccgatggtccttctgttgatatgggtgatttggcg
cttggtcaaaacatgcgtattgctttcatgccttggaatggtttcaacttcgaagactcg
atcctagtatctgagcgtgttgtagaagaagatcgatttacttctatccacattcaagaa
ttaacgtgtgttgcacgtgatactaagcttgggcctgaagaaattactgccgatatccct
aacgtgggtgaaggtgcgctttctaagttggatcaatccggtatcgtatacatcggtgca
gaagttgagccaggcgatattctagttggtaaagtgacgcctaagggtgaaacacagcta
acgcctgaagagaaacttttgcgagctatcttcggtgaaaaagcgtctgacgtaaaagat
acgtcgcaacgtgttaagacgggtacgcgcggtacagttatcgacgtgcaagttttcact
cgtgatggcattgaaaaagatgaccgtgctaagttcattgaaaaatcgcagcttgatcaa
gttcgtaaagacttgaacgaagagttccgtattgtcgagaaagcaacgtttgagcgtcta
gctgaagccctaatcggccagcaagcggaaggcggtcctagcttggctcgcaatgcgatt
attacggaagagtacttggcgaatcttgatcaccctgagtggtttaaaattcgtgttgct
aatgaagaagcgagtgagcagcttgaaaaagcacaagccgctttgattgagcgccgtaaa
gagcttgatgcgaaatttgaagataagaaacgcaaattacaaacaggtgatgatctagcg
cctggcgttcttaagatcgttaaagtttatgttgccatcaaacgccgtatccagccaggt
gataaaatggccggtcgtcatggtaacaagggtgtaatttcgaaaattatgccagttgaa
gacatgccgtatgatgaaaacggtgatccagttgatatcgtattgaacccgctaggtgtt
ccttcgcgtatgaacgttggtcaggttttggagactcacttaggtgcggcatctaaaggc
ttgggtcgtaagatcaacgaaatgcttgttgtggagcgtgagaaagcagaggcggttgca
gaactgcgtagcttcctcgatgaaatctacaatggctacgaaggcgacttgcgttgtgct
cgtacggaagatctagacagctttacagacgaagaaattttaaccttggcctccaaccta
acgggcggtgttccaatggcgtctggcgcctttgatggtgcaaaagaagctgagatcaag
cgtatgttgcgcttagctggaatcaacgaaagtggtcaggttaaattatttaacggccgt
actggtgatgcttttgaacgtcctgtaacggttggttacatgtatatgcttaagttgaat
cacttggttgacgacaaaatgcacgcacgttctaccggttcttacagcttggttactcag
cagccgctgggtggtaaagctcagttcggtggtcagcgtttcggggagatggaagtatgg
gcactagaagcatatggtgctgcttacacgcttcaagagatgttgactgttaagtccgat
gacgtaaatggccgtactaagatgtataaaaacatcgtagacggtgaccaccgtatggaa
cctggcatgcctgagtccttcaacgtgttggtgaaagagattcgttctcttggtatcgat
atcgagctagaaaacgaataa
DBGET
integrated database retrieval system
