KEGG   Methanobacterium aridiramus: FGU46_04285
Entry
FGU46_04285       CDS       T10862                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mrid  Methanobacterium aridiramus
Pathway
mrid03030  DNA replication
mrid03410  Base excision repair
mrid03420  Nucleotide excision repair
mrid03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mrid00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FGU46_04285
   03410 Base excision repair
    FGU46_04285
   03420 Nucleotide excision repair
    FGU46_04285
   03430 Mismatch repair
    FGU46_04285
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mrid03032]
    FGU46_04285
   03400 DNA repair and recombination proteins [BR:mrid03400]
    FGU46_04285
Enzymes [BR:mrid01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FGU46_04285
    6.5.1.6  DNA ligase (ATP or NAD+)
     FGU46_04285
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     FGU46_04285
DNA replication proteins [BR:mrid03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    FGU46_04285
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     FGU46_04285
DNA repair and recombination proteins [BR:mrid03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FGU46_04285
   NER (nucleotide excision repair)
    Other NER factors
     FGU46_04285
   MMR (mismatch excision repair)
    Other MMR factors
     FGU46_04285
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: WJI10562
LinkDB
Position
complement(806045..807718)
AA seq 557 aa
MLYTKLVEVYEALNSTTKRLEKTEILADFLKLIGENEPHILPPVTLMSMGRIFPTWSQKE
LGIGSKLLMKAIASAVGVTPGEVEDQVRETGDIGLASEKLFRRKSQVTLFTRPLTILKVY
KDLVKIADISGGRSQYKKIDILMGLLSSASSFEAKYITRTVIEELRVGVGEGTIKDAISQ
AFHIPKEVIERSHMLTNDLGLVAAVSREEGEEGLKKLSLKPGKPVKPMLAQLSPGIGETV
KEMGWAICETKYDGIRVQIHRKGEDIEIYTRRLENISLALPEIVSYIRESLPAEDFIVEG
EIIVTRDGKPISFQYILQRVRRKYDIERMVDQIPLTLYLFDTLYFGNNLIDTPFRRRREI
LESIVRIYPGKVEISRQVKVTPSDIEKAQKLFEDSINEGHEGIMIKDPEAPYMPGIRGKK
MLKFKAEPETLDLAVVGGTYGKGKRAHFIGSYLLALQDDDNQLRTIAHVATGLDDKTLAE
LSQLVEPLITNQKGRTVRIEPRIVLEIAFSEIVKSPEYESGYSLRFPVVKGIRYDLSPED
IDTLERIDSMFKGSQKS
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgctttatacaaagttggtggaagtctacgaggcacttaactccaccaccaaacggctg
gaaaagacggaaatactggctgattttctaaaattaataggggaaaacgaaccacatatc
ctcccacctgtgaccttgatgtccatgggccgaatattccctacctggagtcagaaagaa
ctgggaataggatccaaactactcatgaaagccattgcctctgctgtaggagtaactcct
ggtgaggtagaagaccaggttcgtgaaaccggggacataggtctggcttcagaaaagctt
ttccgtagaaaaagccaagttactctgttcacccgtcctctgaccatattaaaggtttac
aaagatctggtgaaaatagcagatatttccggtggaagatctcaatataaaaagatagat
atcctcatgggactgctatcatctgcatcttcttttgaagctaaatacataacccggacg
gtgattgaggaattgcgggtgggggttggtgaggggactattaaagatgccatctctcaa
gcctttcatatacctaaagaagtcattgaaaggtctcacatgttaaccaacgacctgggt
ctggtggcggctgtttccagggaagagggagaagaaggtctgaaaaagctttcattaaaa
cctggtaaaccggtaaaacccatgttagcccagttatctcccggaattggggaaactgtt
aaagaaatggggtgggccatttgcgagactaagtacgatggtatccgggtgcagatacat
cgtaaaggtgaagatatagagatttatacccgtagattagaaaatatatccctggcttta
cctgaaatcgtttcctacattcgggaatcactcccagccgaggacttcattgtggaaggt
gaaataattgtcacccgagacggtaaacccatctctttccagtatattttacaacgggta
cgtcgaaagtacgatatcgaacgcatggtagaccagattcctctcaccctctacctgttt
gatactctctactttggtaacaatctcattgacactccctttcgccgtagaagggaaata
ctagagtctattgtccggatatatcctgggaaggtggaaatctccaggcaggtcaaagtc
acaccttctgacattgaaaaggcccagaaactcttcgaagactccattaatgagggacat
gaggggatcatgattaaggatcccgaagcaccctatatgcctggtatccgtggtaagaaa
atgctcaaattcaaggccgaaccagaaactctggatctggccgtggtggggggaacttat
gggaaaggtaaacgggcccactttattggttcctacctgttggccttgcaggatgatgat
aatcagctccgtaccatcgcccacgtggccactggcctggatgataagaccttagccgaa
ctctcacaattggttgagccacttattactaaccagaaaggtcgcacagtaagaattgag
ccaagaatagtgcttgaaatagccttcagcgaaattgtaaaaagtcccgaatatgaaagc
ggatattccctccggttcccggtggttaagggcatacgttatgatctcagcccggaggat
attgacaccttggagagaattgactccatgttcaaaggctcccagaaatcctga

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