Macrobrachium rosenbergii (giant freshwater prawn): 136825705
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Entry
136825705 CDS
T10429
Symbol
tst
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03018
RNA degradation
Brite
Enzymes [BR:
mrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136825705 (tst)
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136825705 (tst)
mRNA degradation factors
3'-5' decay
Ski complex
136825705 (tst)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136825705
NCBI-ProteinID:
XP_066938554
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Position
39:complement(7988228..7997111)
Genome browser
AA seq
1214 aa
AA seq
DB search
MGSQGGVVGLPPVLPTLKEKLEEYLSPEDLPIHDPIYSYKWFPRIPDPTRLFSVTVNPPS
TAVCVERDPATGEITGLREIWNKDAGATSKNSFSMGRAPGPPEEVVRGSSTNYPFWPGGF
PEPDLGKSKSVQEEFSIDFSNLLTKHPKLSRGMIFEKESEPEEVKPVEESNKELVVNITD
ILKLDDNDLEIFSEKEEKLSGKTLTLTLEDLNEEDESMVTSFTIESAPPKKDEFVLNITD
TPRTSHFERKEKSTEWAEHINVNEPVDDFSSQIPNPACTYPFELDTFQKQAILHLEKRNC
VFVAAHTSAGKTVVAEYAVALTLRNMTRAVYTSPIKALSNQKYKDFKVKYDDVGLLTGDI
QINPKASCLIMTTEILQSMLYNGSDLIRDLEWVIFDEVHYINNAERGHVWEEVLIMLPAT
VNIVLLSATVPNTIEFADWIGRIKKRKIYVISTTKRPVPLEHFLYTGTGGKTKDDRFLLV
DANGNFITKGYNDAVASKKEREKKGQQPQGPKQGRQFMGDKQEKNMWIGLIDHLSKRELL
PVVAFTLSKKRCDGNASQLLSQDLTTQREKGEIYTFIKKCTDKLPKSDRELPQVIYMKEL
LSKGIGVHHSGILPILKEVVEMLFAKGLVKLLFATETFAMGVNMPARCVVFDSIRKHDGM
AFRDLLPSEYIQMAGRAGRRGLDTTGTVVILCKVEVPEMSDLHRMMLGRPTKLESQFKLT
YSMILNILRVESLSVQDMLKRSFSEATMMRNQSKYESELKDFEEKLAKEPDFECMMCQDI
EKYYIASKDFTEQRKIVYKLIMGFPGAIKVLSSGRIIIISHDQYQFYLACLLKVDPKDKT
KLTVFILKDSKPSEKLSPDEIKMNECLIASQEGIEVLDETSEHDFLEISSQDIVAVTNKH
IKIDGDKVIDNIKKRQIPRFKSDPPSQSVMEVIKEMQRLNESGGENLIYLNLISDLGIRE
IGAVAAIHRMEIFRSRVVELTCLECTQFREHFGMTYTKLHLREEIGRLKFLMSEEALQLH
PEYQMKIEVLKSLGYIQDNLALTLKGRVACEMGNHELTITELVVDNLVTDKPCDLIAALL
SCMVFQQKNCSDPTLTPELKKGMQEFKNVAKRIGETQRDCGLKETVGDYIDQYNFGLIEA
VYRWAQGVSFKDIMELTDVQEGIVVKCIQRLDEVLKDVRNAGRITGDVRLQEKMMEASTA
IKRDIVFTPSLYTQ
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgggcagccaagggggtgtggttggcctgcctcctgttttgccaaccctgaaggagaaa
ctggaggagtacctatcccctgaagatctgccgatacacgacccaatatattcttataaa
tggttccccagaattccagacccaacacgcctcttcagtgttacagtaaaccctccaagc
actgcagtgtgtgtagagagagatccagcgactggagaaattaccggacttcgagaaatt
tggaacaaagatgcaggagccacatctaaaaactcattttccatgggcagagctcctggt
cctccagaagaagtggtcagaggttcttctacaaactatcccttctggcctggagggttt
cctgaaccagatcttgggaaaagtaagtctgtccaagaagaattcagtatagattttagt
aacctattaacgaaacaccctaagttgtctcgtgggatgatttttgagaaggagagtgaa
cctgaagaagtaaaaccggttgaagaaagtaataaagagttagtagtcaatataacagac
attctgaagttggatgacaatgatcttgaaattttcagtgaaaaagaagaaaaactgtca
ggtaaaacacttactctcactttggaagacttaaatgaagaagatgaatctatggtgaca
tctttcacgatagaatcggcacccccaaagaaggacgaatttgtgttgaatattactgat
actcccagaacctctcattttgagaggaaagagaagagcacagagtgggcagaacatatt
aatgtcaatgaaccagtagatgactttagctcacagattccaaatccagcttgtacatac
ccctttgaactggatactttccagaaacaagcgattttacacttagagaaacggaattgt
gtttttgtagccgctcacacatcagctggtaaaactgttgtcgctgaatatgctgttgcg
ttaacgttgaggaatatgacacgagctgtttatacgtctcccattaaggccctttcaaat
cagaaatacaaagactttaaggtcaaatatgatgatgttggtttgttgacaggagacatt
cagattaacccaaaggcttcgtgtcttattatgacgactgaaattttgcagtcaatgctg
tacaatggcagcgatctgatcagagatttagaatgggtcatttttgatgaagttcattat
ataaataatgccgagagaggtcatgtgtgggaagaggtgcttattatgctcccagctact
gttaatattgttctcctttctgccacagtgccaaatacaatagaatttgcagactggatt
ggaagaattaagaaaaggaagatttatgtaatcagcactactaagcgccctgtgcccctg
gaacactttttgtacactggtactggagggaaaactaaggacgatcggttccttctggta
gatgccaatggaaatttcataacaaaaggttacaatgatgccgtagcttctaaaaaagag
agagagaagaaaggacagcaaccccagggaccaaagcaaggacggcagttcatgggcgat
aagcaagagaagaacatgtggatcggcctgattgatcatttgagcaagagagagttactt
cctgttgttgctttcaccttgtccaagaagaggtgtgatggcaatgcaagtcagctgttg
agtcaagatctcaccacccaacgagaaaagggagaaatttatactttcatcaaaaaatgc
actgataagcttccaaagtctgacagagaattgcctcaggtgatttacatgaaagaactt
ctttccaaaggaattggggtccatcacagtggcatattaccaatattaaaggaagttgtc
gaaatgttgtttgcgaagggattggtcaagctcctttttgccacagaaacatttgctatg
ggggtgaacatgccggcaaggtgtgttgtttttgactccattagaaagcatgatgggatg
gcctttagagatcttctgccaagtgaatacattcaaatggctgggcgcgctggaaggaga
ggtctggacaccacgggcaccgttgtaatactttgtaaagtcgaagtcccagaaatgtcg
gatctgcatcgtatgatgcttggtaggcctacaaaactggaatctcagtttaaacttact
tattctatgattctaaacattctgcgtgtggaaagtttaagtgttcaagacatgctaaag
aggtcattctcagaagccaccatgatgaggaaccagagtaaatatgagagtgagctcaaa
gattttgaagaaaagttggccaaagaaccagattttgaatgcatgatgtgtcaagatata
gagaaatactatattgcatctaaagattttactgaacagcgtaaaattgtttataagctt
atcatgggcttccctggagctattaaagtgctttcctctggcagaattatcatcatttca
catgatcagtatcagttttatttagcttgtttattaaaggtagacccaaaggacaaaact
aaattgactgtgtttattctcaaagattccaaacctagtgaaaagttgtcacctgatgag
atcaaaatgaatgagtgccttatagcaagtcaggaggggattgaggttttggatgaaact
tctgaacatgactttttggagataagttcacaggatattgttgccgttacaaacaagcat
attaagatagacggtgacaaggtaattgataacataaagaagcgccagattcctcgcttt
aaatctgacccgccatctcagtctgtcatggaggtcattaaggagatgcaacgactgaat
gagtctggtggtgagaacctgatttacctcaacttgataagtgatcttggtattagggag
ataggtgctgttgcagcaattcatcgcatggaaattttcaggtctagagttgttgagttg
acttgcctcgaatgtactcagtttagggaacattttggcatgacgtacacaaagttacac
cttagggaggagataggtcgcctgaagttccttatgtctgaagaagcattgcagttacat
cctgaatatcagatgaagattgaagtgctcaagtcacttggttacatccaagataatctt
gctcttaccctcaagggtcgtgtcgcatgcgaaatgggcaaccatgaattgaccatcact
gaactggtagtggataatctcgtgactgacaagccctgtgatctgatagctgcgttgctt
tcttgtatggtcttccagcaaaagaactgcagtgaccctaccctaacacctgaactgaaa
aagggaatgcaggagtttaagaatgttgcaaagcgtattggagaaacccagagagattgt
ggcctgaaagaaactgttggagactatatagatcaatataattttggattaattgaagct
gtgtatagatgggcacagggggtatcttttaaggacataatggagttgacagatgtccaa
gaaggaattgtggtgaaatgtatccagcgattagatgaagtattgaaggatgtcaggaat
gctggcagaataactggagatgtccgactgcaggaaaagatgatggaagcctctactgct
ataaaaagggatattgttttcactcctagtttatatacacagtaa
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integrated database retrieval system
