Macrobrachium rosenbergii (giant freshwater prawn): 136825769
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Entry
136825769 CDS
T10429
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136825769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mrj03041
]
136825769
Spliceosome [BR:
mrj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
136825769
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
PRP4
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_SCAP
eIF2A
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Nbas_N
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
136825769
NCBI-ProteinID:
XP_066938720
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Position
39:complement(16050967..16056217)
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AA seq
507 aa
AA seq
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MSDGEDSPVGGGGGNARERQWYGSLGATMGGTDSPSETPSSPAASNIHTSNEYMELDEPE
MLDEKKALLEEFERKRRARMIHVTTDDSEVKQQLRQLGEPICLFGEGPADRRNRLKELLS
RLGEDALKKTASEKQEKETTEHTQESPEETWYHEGPKELRDARMFLVNFSIPRARARLKQ
EHLDNQIPEATRTAKRQEIQNKLRAFSLIGSQNADSRPISYCSFSPDGKLLSTSSWSGLC
KVWKVPECTEIQSYHGHNCYVDCVEWHPSATLTMDSSALNLVSSGRDGSVQLWSLDSDNP
LGELPTMEARVSRVSFHPSGRFLGACVHDNSWRLWDLEIQEEVLFQEGHSKAVYCLGFQF
DGSLAATGGMDAFGRVWDLRTGKCIMFLSGHQEPILAVDWSPDGYHLVTGSEDNSARVWD
VRARRCIYSIPSHTGIVTGARYDKTGGQYIVTSSYDGSVRVWCHGSFQPLRALEGHGQKV
MGVDISPFDGIIATCSFDRTFKIWGPD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatggagaagattcaccagtgggaggtggaggtggcaatgcccgtgaacgtcag
tggtatggatcccttggggccacaatgggaggcacagattctccaagtgaaacaccaagt
agccctgctgcttcaaacatccacactagcaatgaatacatggaattggatgaaccagaa
atgttagacgaaaagaaagcattgcttgaagagttcgaaagaaagcgacgagcacgtatg
atccatgtcaccacagatgatagtgaggtaaaacaacagctgagacaactaggagaacct
atatgcctctttggtgaaggtcctgctgaccgaagaaatcgattgaaggaacttctctct
agactaggtgaggatgctttgaaaaaaactgcatcagaaaaacaagaaaaagaaaccaca
gaacacactcaagaaagcccagaggagacatggtatcacgagggacccaaagaactcagg
gatgcaagaatgtttcttgtaaatttctcgatacctcgggcaagagccagattaaaacaa
gagcacttagataaccaaattccagaggcaactcgtactgctaagaggcaagagatacag
aataagttgagagcgtttagtcttattggcagtcaaaatgctgattcaagacccatttct
tattgcagttttagccctgacggaaagctgttatcgactagttcctggagtggattatgt
aaggtttggaaagttccagaatgcacagaaattcagtcttatcatggacacaattgttat
gtagactgtgttgagtggcatccaagtgcaacattgaccatggactcctcggctctcaac
ttggtctcaagtggtcgagatggaagtgtgcagttgtggagcttggacagtgataaccca
cttggagaattaccaaccatggaagcaagagtttcacgagtcagcttccatccaagtggg
aggtttctgggggcatgcgtccacgacaacagttggaggttatgggacctcgaaatacaa
gaagaagttctttttcaagaaggtcattcaaaagcagtatattgccttggctttcagttt
gacggctctttggctgccactggagggatggatgcctttggaagagtttgggatttaaga
actggcaagtgcattatgttcttgagtggacaccaggaaccaattttggctgttgactgg
tcacctgatggttaccatttggtaacaggcagtgaagataactcggcaagagtttgggac
gttcgagcacgccgttgtatttattcaatcccttctcacacaggcatcgtcactggtgct
cggtacgacaaaactggaggacagtatattgtaacaagttcatatgatggctctgtacgt
gtttggtgtcatggctcgttccaacctctgcgggcccttgaaggacatggccaaaaggtg
atgggagttgatatctccccatttgatggcattattgcaacatgttcatttgacaggaca
ttcaagatctggggtcctgactga
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