Macrobrachium rosenbergii (giant freshwater prawn): 136825803
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Entry
136825803 CDS
T10429
Symbol
Hpr1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03013
Nucleocytoplasmic transport
mrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136825803 (Hpr1)
09122 Translation
03013 Nucleocytoplasmic transport
136825803 (Hpr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrj03019
]
136825803 (Hpr1)
03041 Spliceosome [BR:
mrj03041
]
136825803 (Hpr1)
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
136825803 (Hpr1)
Spliceosome [BR:
mrj03041
]
Complex C
Other components
EJC/TREX
136825803 (Hpr1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
136825803 (Hpr1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Myb_DNA-binding
DUF8439
Motif
Other DBs
NCBI-GeneID:
136825803
NCBI-ProteinID:
XP_066938833
LinkDB
All DBs
Position
39:17845883..17874616
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AA seq
678 aa
AA seq
DB search
MADTTLSFNHIFSKVQSTLPGCIKSENASPITDIFNSKIPETTKHCIEVAVRNYVTKKII
QGEKTNLGAIRAVTLVCIELVRNELSLPTLPVQVLGDSFDGLTIDLCEELFTFVESNVSI
WKEDTFFSPCKTSVLRMCNDLLRRLSRSQNTVFCGRILLFLARFFPFSERSGLNLISEFN
LENVTTFTNVEQDPEEMEEETKEKEGGGVSLDYTLYTKFWSLQDFFRNPPQCFQKAPWKM
FTVYCGDVLEAFKSFKLDNVQSRSTTAAQISRSLSTEPSTQENSKSEPQDQYFAKYLTNQ
KLLDLQFSDANFRRYVLLQILILTQYLTSDIRFKTETLTEEQLAWVRKTEELVFSLLAET
PPDGMAFVGTVKHILKRELMWSDWKNNGCPDIKGPNDEADKNQNGKKDDWDAKAALKKRG
KKRLGEIVKEADSKKKFSMGNAEMSRLWNLHQDNLEACKLPERDFVPALETYFNPAIEQL
SGKTDVKEQDRLVNDSNFGWRGLRLLANRSPHFFTHSASPIATLPEYLTTMIKKLAKELP
SQLSDDMKAEEEEDKEDEKVILEQNDGVKDEEESMEVDGGEDRPEVRAINEEEQKALAKN
LVKLGGDKWKALAKKLGFQDDEIEYMETEKGKKGSPEGAAVYMFHLWVENEGEEANKDNL
LYTLGGLKMTEIAEGVFT
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaccactttgtcatttaatcacatattttccaaagtacagtcaacgctgcct
ggatgcataaagagtgaaaatgcttcgccaataacggatatttttaacagtaaaatccca
gaaacaacaaagcactgcattgaagttgcagttcgtaattatgtcaccaaaaaaattatt
cagggagaaaaaacaaacttgggtgctatcagagctgttacactggtctgcatagagttg
gttcggaatgagttgagcttacctacactaccagtccaggttcttggggactcttttgat
ggtcttaccattgatctctgtgaagaactgttcacgtttgttgagtccaatgtcagcata
tggaaagaagacacgttcttctcaccgtgcaagacaagcgttttgcgaatgtgcaatgat
ttgttgcggagattatcacgttctcagaacactgtgttctgtggtagaatactgctcttt
ttggcaaggtttttcccattttctgagcgttctggtctaaatttgatatctgaattcaac
cttgaaaatgtcacaacattcaccaatgtggaacaggacccagaggaaatggaagaggaa
accaaagagaaggaaggtggaggagtcagtctagattatactttgtatacaaagttttgg
tcactacaggactttttccgaaatcctcctcagtgttttcaaaaagcaccatggaaaatg
tttacagtgtattgtggagatgttttagaagccttcaagagcttcaagttggacaatgta
caaagtcgcagcactactgcagcacagatatcacgctcactatcaacagaaccttcaacc
caagagaattcaaagtcagaaccacaggatcaatattttgctaaatacctgaccaatcag
aaactccttgatctccagttctctgatgctaacttccgtcgctatgttttactacaaatt
ctcatactaacgcagtatctaacgtcagacattcgattcaaaacagaaacgcttacagag
gaacaacttgcctgggtcagaaagactgaagaactggtgttctctttattagctgaaacg
ccgcctgatggaatggcatttgttgggacagtaaaacacattctcaagcgagaactgatg
tggagcgattggaagaataacggctgtccggacatcaaaggcccgaatgacgaagcagat
aaaaaccagaatggcaaaaaagatgattgggatgctaaggcagctttgaaaaagagagga
aagaagaggctgggggaaattgtcaaggaagcagattccaagaaaaaattttcaatggga
aatgcagagatgtcacgattatggaatttgcatcaagataatttagaagcatgtaaatta
ccagagagggactttgtaccagcactggaaacgtacttcaatcctgctattgaacaactc
agtggaaaaacagatgtgaaggaacaggacaggcttgtaaatgacagtaattttggctgg
agaggcttgcgtctattagcaaacagatctccacatttcttcacccattcagccagccca
atcgctacattgccagaatatctaacaactatgatcaagaaattagccaaagaattaccg
tcccagttgtcggatgatatgaaagcagaggaagaagaggataaagaggatgaaaaggta
attttagaacaaaatgacggtgtaaaagatgaggaggagtctatggaggttgatggcgga
gaagatcgaccagaggtgagggccatcaatgaagaagagcagaaagcacttgccaaaaac
ctcgttaaattgggtggtgacaagtggaaggctctggccaagaaacttggattccaagat
gatgagattgagtatatggagacagagaaaggcaagaagggcagtccagaaggtgcagct
gtgtacatgttccatctttgggtggaaaatgaaggtgaggaggccaacaaggacaacttg
ctctacactcttggtggattgaagatgacagaaatagcagagggagtcttcacctga
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