Macrobrachium rosenbergii (giant freshwater prawn): 136827752
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Entry
136827752 CDS
T10429
Symbol
Tfb1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03022
Basal transcription factors
mrj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136827752 (Tfb1)
09124 Replication and repair
03420 Nucleotide excision repair
136827752 (Tfb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrj03021
]
136827752 (Tfb1)
03400 DNA repair and recombination proteins [BR:
mrj03400
]
136827752 (Tfb1)
Transcription machinery [BR:
mrj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
136827752 (Tfb1)
DNA repair and recombination proteins [BR:
mrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
136827752 (Tfb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
136827752
NCBI-ProteinID:
XP_066941314
LinkDB
All DBs
Position
42:complement(19145584..19192253)
Genome browser
AA seq
494 aa
AA seq
DB search
METPVVSFFSARCLYVSDTCFGLDTPVLRQTSKAKMSGEREDILLQVNHVRYKKNNGQLY
LSQSRVGWMMDDSDTFTVSVQYSDIRSKYAVWLFTVGYKDTLFPFWKPDQLSSGVMEFIP
NQDVGISGAFLADIKPQTDGSNGKVQYNITPEIMLAVFKTYPAVKKKHSEYVPHRMSEAE
FWTRFFQSHYYSVHTNSSSENVFSECAKYDDKEWNRDVESAKTDPLYDLNDIYEEKPMSI
DSDIRIAGAKAGSNIMHATMIKRLVLLLEKCIYLLTHNRPTVFPNGDADPEVEVHKSKKV
RLEEKVTYDDLQGPSKVESASLTINQTHRYLIGPTEYSSVQRLEPRQVSILQQQMVASVC
SWKPDLPNSQDPDAAYMNLQQFSDMCRRGRTSGGIRSGDELPGKLHKELTLVYSSAGELL
RHFWSCFPPRTPQLQEKLHRMHQTLCRYHEKTIRPFRDMAVNDYNCNATILDHLLGMINI
ANTKYENWKARNSR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgcccgtagtttctttcttctccgctagatgtctctacgtgtccgacacatgt
tttggtctagacaccccagtgttacgccagacgtcaaaggcaaagatgagtggtgagagg
gaagatatccttcttcaggtgaatcatgtccgctacaagaaaaataatggacagctttac
ctttctcagtccagagtcggctggatgatggatgactcagacacttttacggttagcgtt
cagtatagtgatatccgaagtaagtatgctgtatggttgttcactgtgggatacaaagac
actttatttcctttttggaagccagaccagctgtccagtggggtcatggagtttattcca
aatcaagatgttggaatatcaggagcttttcttgctgatattaaaccgcaaactgacggg
agcaacggaaaagtacaatataatataacaccagagataatgctggctgtattcaagacg
taccctgcggtgaagaaaaaacactctgaatatgttccacacagaatgagtgaagcagag
ttctggacgcgtttctttcagtcacattattacagtgttcatacaaacagtagcagtgaa
aacgtgttttcagaatgtgcaaaatatgatgacaaagagtggaacagagatgtagagtca
gctaaaactgatcccttgtatgacttaaatgatatttatgaagagaagccaatgtcgata
gatagtgatatcaggattgcaggtgccaaggcaggaagtaatattatgcatgccactatg
atcaaaaggttagtactcttgcttgaaaagtgtatttatttgttgacacacaaccgacca
acggtcttccctaatggtgatgcagatcctgaggtagaagtacacaaaagtaaaaaggtt
cgtttagaagaaaaagtaacatacgacgaccttcaaggtccttccaaagttgaaagtgcc
tcattaaccataaaccaaacacatcggtacttaatagggcctacagaatactccagcgta
caaagacttgaacctcgtcaggtaagcattttgcaacaacaaatggtggccagtgtatgc
agctggaaaccagatttgccaaattcacaagatccagatgctgcttatatgaatcttcag
caatttagtgatatgtgtcggagaggtagaacaagtggaggcattcggtcaggtgatgaa
ctgcctggaaaattacacaaagaacttacattagtttacagtagtgcaggagaactgtta
aggcatttttggtcatgttttcctccaagaacaccacaattacaggaaaaacttcacaga
atgcatcagaccctctgccgttaccatgaaaaaacaattagaccgtttcgggacatggct
gtgaatgattacaactgcaatgcaaccatcttggaccatctgttaggaatgatcaacata
gcaaacacaaagtatgaaaattggaaagcgcgaaattctaggtga
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