Macrobrachium rosenbergii (giant freshwater prawn): 136833374
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Entry
136833374 CDS
T10429
Symbol
Ssl1
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03022
Basal transcription factors
mrj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136833374 (Ssl1)
09124 Replication and repair
03420 Nucleotide excision repair
136833374 (Ssl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrj03021
]
136833374 (Ssl1)
03400 DNA repair and recombination proteins [BR:
mrj03400
]
136833374 (Ssl1)
Transcription machinery [BR:
mrj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
136833374 (Ssl1)
DNA repair and recombination proteins [BR:
mrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
136833374 (Ssl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Zn_ribbon_GTF2H2
IBR
VWA_3
Motif
Other DBs
NCBI-GeneID:
136833374
NCBI-ProteinID:
XP_066951535
LinkDB
All DBs
Position
4:complement(42466282..42484162)
Genome browser
AA seq
397 aa
AA seq
DB search
MLQDEDDQDHKYRWAASGYEKTWEIVGEDESGRIEPSVTEMIQRARRRRLLEREASVRLG
IMRHVFVILDMSQAMSEQDFKPTRQICLLKILEDFIKEFHDQNPISQMGLITMQSKTAKP
CSNLSNNPQRHMEAIKKLLDSPCRGEPSIQNALDVALSSLRHLPRHTSREVLIIYAALTT
CDPGEIENTVKKVKEANVRVSVIGLTAELHVCKEISQETGGSMSVSMNDVHLKELINEHL
EPPAASVKMDHTLIKVGFPHQVNIDAKAALCMCHLDDLPALNTRGYYCPQCTAKYCDLPA
ECRVCGLMLVTAPHLARSYRHLFPLKHFIEEPSQNTSATNCYGCLKPFTDSSADKNVYIC
GTCKQVFCFNCDIFLHETLHSCPGCASNPAISQYHSS
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaagacgaagacgatcaggatcataaatatcgatgggctgccagtggatacgag
aaaacatgggaaattgtaggagaagacgagtctggccgaatcgagccatcggtaacagaa
atgatccagcgggcaagaagacgaagattattagagcgagaagccagtgtgagattagga
attatgcgtcatgtttttgttatattagacatgtctcaggcaatgagtgaacaagacttt
aaacctacaagacagatctgtttacttaagattctggaagatttcatcaaagaattccat
gatcaaaatccaataagtcagatgggcctgataacaatgcagagtaaaacagccaaacca
tgcagtaatctcagtaataatccccaaagacacatggaggctatcaaaaaattattagat
tctccatgccgaggtgagccatcaatacagaatgcattagatgtagccttatcttctttg
cgccatcttccacgacatacttctagagaggtgttgattatttatgcagctttaacaacc
tgtgacccgggagaaattgaaaatactgtaaagaaggtcaaagaggctaatgttcgagtg
tctgtcattggccttacagcagagctccatgtttgtaaagaaattagccaagaaacagga
ggctcaatgtcagtttctatgaatgatgttcatctcaaggaactgattaatgaacacctg
gagcctcctgctgcatctgtcaaaatggatcacacactcatcaaagttggctttcctcat
caggttaacattgatgccaaagcagccctttgcatgtgtcatttagatgatcttccagcc
cttaacaccaggggttactattgccctcagtgcactgctaaatattgcgatctgccagct
gaatgcagagtttgtggtctcatgcttgtgactgctccacatcttgcacggtcatataga
cacttgtttcctctgaagcatttcatagaggaaccatcacaaaacacttctgcaacaaat
tgttatggttgtctgaagccattcacagacagttctgcagacaaaaatgtatatatttgt
gggacctgtaagcaagtgttttgcttcaactgtgacatcttcctccatgagacattgcac
agctgtccagggtgtgcttccaatcctgcaatttcacagtaccattcgtcttga
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integrated database retrieval system
