Macrobrachium rosenbergii (giant freshwater prawn): 136834928
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Entry
136834928 CDS
T10429
Symbol
fand
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136834928 (fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrj03019
]
136834928 (fand)
03041 Spliceosome [BR:
mrj03041
]
136834928 (fand)
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
136834928 (fand)
Spliceosome [BR:
mrj03041
]
Complex B
Other components
Prp19-related factors
136834928 (fand)
Complex C
136834928 (fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
NRDE-2
DALR_1
ARM_TT21_C
Phage_C
HAT
Motif
Other DBs
NCBI-GeneID:
136834928
NCBI-ProteinID:
XP_066953868
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All DBs
Position
54:29053041..29066375
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AA seq
851 aa
AA seq
DB search
MIMDASTIVIETDDLQYEEELLRNPYSVKHWMRYIEHKKDGAPKKLNIVYERALLQMPGS
YKLWHLYLRLRMQQVKGRCITDPEYESVNNTFERALVFMHKMPRVWIDYCQFLINQKKIT
RTRKTFDRALCALPITQHNRIWPLYLKFVMSYRIPETAVRVWRRYLKLCPEDTEDYINYL
MSIGRLEEAAKKYEWCVNTDTFTSKYGKSKHQLWSELCELISKNPQETSLKNAEAIIRHG
LQRYTDQVGMLWNSLAEYYIISTLFERARDVYEEALRSVMTVRDFTQVFDAYAQFEELML
KQRMEEVALTDGDEEEETELELRLARYEDLIQRRPLLLNSVMLRQNPHNVLEWQKRVTLY
EGKPKMIVATYMEAVKTIDPKQATGKLYSLWVDFAKFYEDNSQIMDARIIFQRATEVPYV
KVDDLASVWCEWAEMEIRHDNEEEALKLMKRATAPPPHKVAYNDESEPVQRRVYKSLKLW
SMFADLEESLGTFKSCKAVYDRIIDLRIATPQIIINYGMYLQENNYFEEAFKAYEKGIAL
FKWPYVYDIWNTYLMRFLDRYKGTKIERARDLFEQCLEKCPPKYARNLYLLYAKMEEEHG
LARHAMQIYSRATKAVPPEEKLSIYNIYLQHAQQIYGVTRTREIYQEAIDDLPDEGAREM
CLRFAEMERKLGEIDRAREIYVYCSQICDPRVTADFWAKWTDFEVAHGNEDTMKELLRIK
RSMQAKYNTQVNMMSAQMLASAGTVAGTVSDLAPGAKDGMRMLEARAFAMNKPDEQNPPT
TSAPSAPGGSKILFVRGSTTKRDDEVADTARAANPDEISLDEDEDDDDDDDEDIPQQREV
PSAVFGQLKQE
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgattatggacgcgtcaacgatagtaatagaaactgatgatttacaatacgaagaggaa
ctacttcgaaacccctactcggtcaaacactggatgcgatatattgagcacaaaaaggat
ggggctcccaagaagctcaatattgtctacgaaagagccctgttgcagatgccagggagc
tataaattgtggcatttgtacctgaggttgcgcatgcagcaagttaaaggccgctgcata
acagatccagaatatgagagtgtcaacaatacatttgaaagggctttggttttcatgcac
aagatgcctcgtgtttggattgattattgtcagttcctaataaaccagaaaaagattaca
agaactagaaagacatttgaccgagccctgtgtgctttacccattacacagcacaacaga
atatggccactgtatttgaaatttgttatgtcttataggatacctgaaactgccgtcaga
gtgtggaggagatatcttaagctatgtccagaagacactgaggactacattaactacctc
atgtcaattggaaggctagaagaagcagccaaaaagtacgagtggtgtgtcaacacagac
accttcacttccaagtacggcaaatcaaagcatcagctgtggtctgagctttgtgaactg
atctcaaaaaaccctcaggaaaccagtttaaaaaatgctgaggctatcattcgtcatggt
ctgcagaggtacacagatcaagttggcatgttgtggaattcattagcagaatactatatt
attagtaccctgttcgaaagggccagagatgtttatgaagaagccctgcggagtgtcatg
actgtgagagattttactcaagtctttgatgcttacgcccagtttgaagaattgatgttg
aagcagcgtatggaagaagttgcattaacagatggggacgaagaagaggaaactgaatta
gagctgagactggcaagatacgaagatctcatacaaagacgtccattgttacttaactca
gtgatgctacggcagaatccccacaatgtcttggagtggcagaagcgagtcactttatat
gaaggaaagcccaaaatgatagtggcaacttatatggaagcagtcaagacaattgacccc
aaacaagccactggtaaactttattcattgtgggttgactttgccaaattttatgaggat
aacagtcaaatcatggatgcccgcatcatcttccagcgggctacagaagttccatacgtg
aaggtcgacgacttggcgagtgtgtggtgcgaatgggctgaaatggagattaggcacgac
aatgaggaagaagctttgaaactaatgaagagagctacagcaccacctccacataaagtg
gcttacaatgatgaatctgagcccgttcaacggcgtgtatacaaatctttgaaactatgg
tccatgtttgctgacctagaagaaagcttggggactttcaaatcatgtaaagctgtgtat
gacaggattattgaccttcgaattgccacacctcagattatcattaactatggaatgtat
ttacaggaaaacaattactttgaggaagcctttaaagcctatgaaaaagggattgcactc
ttcaagtggccctatgtgtacgatatttggaacacctatctaatgaggtttttagaccga
tacaaaggaacaaaaattgaacgagcaagagatttatttgagcagtgtttggaaaaatgt
ccacccaagtacgccagaaatttgtatctattgtatgcaaagatggaggaggagcatggc
ttggccagacatgcaatgcagatctacagcagggccacaaaagctgttccacctgaagag
aaattgtcaatatacaatatatatctgcagcatgcacaacaaatatatggtgtgacaaga
acaagagagatatatcaggaagctattgatgaccttccagatgagggggcaagggaaatg
tgtcttcgttttgcagagatggagcgcaaacttggagagattgacagggctcgagaaatt
tatgtctactgtagtcagatatgcgatccacgtgttactgctgatttttgggccaagtgg
acagattttgaagtggctcatgggaatgaggacacaatgaaagaacttttgagaattaag
cgttcaatgcaggctaaatataacacacaggtgaacatgatgtcagcgcagatgttagcc
tcggccggaacagtggctgggacagtatccgatctggcaccaggtgctaaggatggcatg
cgtatgcttgaggcccgtgcctttgctatgaataagcctgatgaacagaatcctcccacg
acctcagctccatctgccccaggaggatccaaaattctctttgtccgtggatcaaccact
aagagggacgatgaagttgctgatactgcgcgtgctgctaatcccgatgaaattagcctg
gatgaggatgaggatgatgatgacgatgatgacgaagacattcctcaacaacgtgaagtc
ccttcagcagtatttggccaactcaaacaggaataa
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