Macrobrachium rosenbergii (giant freshwater prawn): 136835415
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Entry
136835415 CDS
T10429
Symbol
RtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mrj03016
]
136835415 (RtcB)
Enzymes [BR:
mrj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
136835415 (RtcB)
Transfer RNA biogenesis [BR:
mrj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
136835415 (RtcB)
Prokaryotic type
tRNA splicing ligases
136835415 (RtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
136835415
NCBI-ProteinID:
XP_066955019
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All DBs
Position
55:73589615..73616193
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AA seq
506 aa
AA seq
DB search
MVVRQYNDELKYLERLTPNCWRIKKGFQPNMNVDGIFYVNDHLEKLMFDELRNYCRPGAV
GGFLPGMKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMDDPKAVVSPGGVGFD
INCGVRLLRTNLTEADVNPVKEQLAQAMFDHIPVGVGSKGIIPMTARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMAQADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEQKGQICVMIHSGSRGFGHQVATDALVAMEKAMKRDGIDTNDRQLACARIK
SQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKMFQSSPDDLDMHVIYDVSHNIAKIE
QHWIDGKLRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
METFGSTCHGAGRALSRAKSRRNLDYTDVLNKLQEMGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtccgacagtacaatgatgagctcaaataccttgagcgcctcacaccaaactgt
tggcgtatcaagaaaggcttccagccgaatatgaatgtggatggaatattttatgttaat
gatcatcttgaaaagcttatgtttgatgaattgcgaaattactgtcgtccaggagctgta
gggggtttccttcctggcatgaagcaaattgcaaatgtcgctgctttacctggcattgtt
gggaaatctgtaggcttgcctgacgtccattcaggatatggctttgctataggaaatatg
gctgcctttgacatggatgacccaaaggctgttgtttctcctggtggtgtcggttttgac
ataaattgtggagtccgactacttcgaacaaatctcactgaggcagatgtaaatcctgta
aaggaacagttggcccaggctatgtttgatcacatccctgtaggtgtaggatccaaagga
attattccaatgaccgccagagatcttgaagaggcattggaaatgggcatggattggtca
ctaagagaaggttatatttgggctgaagacaaagaacactgtgaagaatatggacgaatg
gctcaggctgaccctgccaaagtatctatgagggctaagaaacgaggactaccacagctt
ggaacactaggagctggtaaccattatgcagaaattcaagtcgtagatgaaatttatgac
aaatgggctgctagcaagatgggaatagaacagaaaggtcaaatttgtgtgatgattcac
tcaggttcccgcggttttggtcatcaagttgccacagatgctcttgttgctatggagaaa
gcaatgaaaagggatggaattgacaccaatgatcgccagttggcatgtgccagaataaag
tcacaagagggtcaagattatttaaaatcaatggctgcagctgcaaattttgcatgggtt
aatcgttcatctatgaccttcttgagtcgccaagccttcgccaaaatgtttcaaagtagt
ccagatgatctcgatatgcatgttatttatgatgtttcgcacaatattgctaaaattgaa
caacactggattgacggcaaacttcgaacgttattggttcatcgaaagggatcaacaagg
gcattcccacctcaccatccattgatcccagtagattatcagctgactggacaacctgtt
cttattggtggaacaatgggtacttgttcctatgttttgactggtaccgaacaaggcatg
atggaaacgtttggatcaacttgtcatggcgctggacgagctctttccagggctaaatct
cgcaggaatctcgactatacagatgtgcttaacaagttgcaagaaatgggtattagtatc
agggtagcatctccaaaattagttatggaagaggcacctgaatcttacaagaatgttacg
gatgttgtggatacctgtcatgctgctggcattagtaaaaaatgtattaaactacgaccc
attgcagtaattaaaggctaa
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