Macrobrachium rosenbergii (giant freshwater prawn): 136835885
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Entry
136835885 CDS
T10429
Symbol
Spt5
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
136835885 (Spt5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrj03021
]
136835885 (Spt5)
03019 Messenger RNA biogenesis [BR:
mrj03019
]
136835885 (Spt5)
Transcription machinery [BR:
mrj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
136835885 (Spt5)
RNA polymerase I system
136835885 (Spt5)
Messenger RNA biogenesis [BR:
mrj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
136835885 (Spt5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW7_SPT5
KOW6_SPT5
KOW2_Spt5
KOW5_SPT5
Spt5-NGN
KOWx_SPT5
KOW1_SPT5
Spt5_N
GPKOW_C
SH3_KIN17_C
RSRP
DUF3912
Motif
Other DBs
NCBI-GeneID:
136835885
NCBI-ProteinID:
XP_066956199
LinkDB
All DBs
Position
1:17780250..17835454
Genome browser
AA seq
1148 aa
AA seq
DB search
MMSDSDASFHSDSEVEKSGGGSDSEGETRRSRSRSGSGSRRGSPSRSRSRSASGSRSRSR
SRSGSRSRSRSRSRSQSRSRSRSRSRSRSRSRSRSVRSDEAMEARSGEEEVSGDEEPADG
EDLANSEYDSEEEEDDDLHHKKKKKRGIVSDYFLDEAEVDDDEGEDDEDEEGDDYDLLGN
EKEEVGVTAREIEANRRAHSVWDNEREEEIEEYYRRKYAEETSAAMRFGEGGEEMSEEIT
QLTLLPGVKDPNLWMVKCRIGEEKMTALQLMRKMIAYQFTDEPLQIKSVVAPEGVKGYVY
IESYKQTHVKAAMEGISNLKLGTWKQTMVPINQMTDVLRVAKEVPTLKRGAWVRLKRGIF
KDDLAQVDYVDSSHNNVHLKLIPRIDYTRMRGALRGTQSENEKRKKFRRPPQKLFDMDAI
RAIGGEVSQDGDFLIFEGNRFTRKGYLYKIFAMSAIMADGVKPTLSELEKFEEQSLADME
LTTSGREEEAHSFAPGDNVEVHEGELMNLMGRVTRVDGNKIMILPKHEDLKDELEFSAHE
LRKYFNQGDHVKVIAGRYEGDTGLIVRVEENMIVLFSDLTMHELKVLPRDLQLCADVATG
VDSLGQFQWGDLVSLDAQTVAVIVRLEKENFQVLNMHGKLVQVKPQAVHKKEKRRAMVLD
SEQNTLQIKDIVKVIDGPHSGRQGEIRHLYRNFAFLHSKMMIENGGIFVCKTRHLVLAGG
AKTVTGGMGMTMGFMSPRLKSPVHPGGGGGGGGAGGGGVMDRGADRGAFGERNRGRGRGR
GAGRDRGVIGQTIKITQGPYKGHVGIVKDATDSTVRVELHSKCQTIIVDRSRVAVVGAPS
KPGSLASVTRTPTWSGSQTPMYGNTGSRTPMYGSQTPQYDGSRTPHYGSMTPSHDGSATP
GRQSAWDPTITNTPARHNEFDDYSFDEASPSPAYNPGTPGYQSDAGQGPYTPQTPGTVYS
SDHNYSPYQPEPSPTGYQPGGSPSGYVGTPSPGTGYQGSPSPGSGYASPSPLASYSPMTP
GAPSPYNPQTPGAGMDTLGMTDWQTSDIEVRIKETHDDSGLIGQIGEIRGVSGGMCSVFL
PEEERVVNILGAHLEPVTPAQGDRVKVIFGEEREQTGNLLSIDHNEGVVKLDHADVKMLQ
LRYLCKMK
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcagacagtgatgcaagttttcactcggactccgaggtggagaaatccggtgga
gggagtgatagtgaaggagagacacgacgtagccgtagtcgtagtggcagtggcagtaga
cgcggttctcccagcaggagtagaagccggagtgcaagtggtagcagaagtcgcagcaga
agccgttctggaagccgtagcagaagtaggagtaggagccgcagccagagcagaagtagg
agccgtagtagaagccgaagtagaagcagaagcaggagccgatctgtaaggtcagatgaa
gcaatggaagctagaagtggagaggaagaagtcagtggtgatgaagaaccagctgatgga
gaagaccttgcaaattctgagtatgatagtgaagaagaagaggatgatgatctgcaccac
aagaaaaagaagaaaagaggcatagtttcagattacttcttagatgaagcagaggtcgac
gacgatgaaggggaagatgatgaggatgaggagggtgatgactatgatttgcttggaaat
gagaaagaagaggtaggcgttactgccagagaaattgaagcaaaccgtagagcacacagt
gtttgggacaatgaacgtgaagaagagattgaagaatactacagacgcaagtatgctgag
gaaacatctgcagccatgcgttttggtgagggaggcgaagagatgagtgaggagattacc
caactgactctccttcccggtgtcaaggatcccaatctttggatggtgaagtgtcgcatt
ggtgaagaaaaaatgactgctctgcagttgatgagaaagatgatcgcttaccagttcacc
gatgagccattacaaattaaatcagtggttgctccagagggtgtcaaaggttatgtatac
attgagtcatacaaacagacccatgtaaaagctgctatggaaggtatctcaaacctcaag
ctcggtacatggaaacagacgatggttcccatcaatcaaatgactgatgtcctgagagtt
gcaaaagaagttccaacattgaaacgtggtgcctgggtcaggttgaaaagaggtatcttc
aaggatgatttagctcaggtggattatgtcgactcatctcacaataacgttcacttgaaa
cttattcctcgaattgattatactcgcatgagaggtgctcttagaggaactcagtcagag
aatgaaaaaaggaagaagttccgccgacctcctcagaagctctttgatatggatgctatc
agggctatcggaggggaagtctcacaggatggtgatttcctcatctttgaagggaatcgt
ttcacgcgcaaaggttatttgtacaagatctttgccatgtccgcaatcatggcagacggt
gtaaagccaacgctaagtgaactggagaagtttgaagaacaaagtttggctgacatggaa
ctgacaacgtctggacgcgaggaagaggctcacagctttgccccaggagacaatgtagaa
gtacatgaaggtgaattgatgaatttgatgggtcgtgtaactagagtagatggtaacaag
attatgattcttccaaaacatgaagatttgaaggatgagttggagttttcggcacatgaa
ttgaggaagtacttcaatcaaggtgatcatgtaaaggttattgctggacgatatgaagga
gatactgggttgattgttcgtgtagaggaaaatatgattgttctcttctctgatcttact
atgcacgaattgaaggttttgccaagggatttgcaactgtgtgctgatgtggctactggt
gttgattcccttggtcagttccagtggggagatcttgtgtcactagatgctcagactgtt
gctgtgatagtaagactagagaaggaaaacttccaagtcctaaatatgcatggaaagtta
gtgcaagtcaagccacaggctgttcacaagaaggaaaagaggcgagctatggttcttgat
tcagagcagaacacacttcagataaaagacattgtaaaggtcatagatggacctcattca
ggccgacaaggagagatcaggcacttgtacagaaattttgccttcctccattctaaaatg
atgattgaaaatggaggtatctttgtgtgtaaaacaaggcatttggttcttgcaggaggc
gctaagacagtcacaggaggtatgggcatgactatgggcttcatgtctcctcggctgaag
tcccctgttcatcctggtggtggaggaggcggtggtggtgctggtggtggtggtgttatg
gaccgtggagcagaccgtggtgcttttggcgaacgcaatcgaggaagagggcgaggaaga
ggtgctggaagagatcgtggtgttattgggcagaccataaagatcacacaaggaccttat
aaaggtcatgttggtattgtcaaggatgccacagactccactgtacgtgtagaattgcat
tcaaaatgccagacgattattgtggaccgttcacgtgtggctgtagtaggggcaccatct
aaacctggctctctggcatctgtcactcgcactcctacctggagcgggtcacagacacct
atgtatggcaatactggatctcgcacaccaatgtatggctcacagactccacagtatgat
ggctctcgaacacctcattatggtagcatgacgccctcccatgatggatcagctacacca
ggaaggcagtcagcttgggatccaacaattactaataccccagcacgtcataatgagttt
gatgattattccttcgatgaagcatctccatccccagcatataatcctggtactcctggc
tatcagtctgatgcaggacaagggccatacactccacagactccaggcactgtttatagt
tcagatcataattacagtccttatcagcctgaaccatcaccaactggataccagcctgga
ggcagcccatcaggatatgttggcacgccaagcccaggcactggataccagggatcacca
tctccaggctcaggttatgcttccccatctcccctggcttcttatagccccatgactccg
ggtgcaccatcaccttacaaccctcagaccccaggcgctgggatggatacccttggtatg
actgactggcaaacctctgatattgaagtcaggattaaggagactcatgatgattctggt
ctcattggccagattggtgaaattcgtggtgtatctggtggtatgtgctcagttttcctt
cctgaagaagagcgagttgttaatattctaggagctcatctagagcctgttacccctgca
caaggggacagagttaaagttatattcggtgaggaaagagaacagactggtaatctgctt
tctattgaccataatgaaggagtggtcaagttggaccatgctgacgtaaagatgttgcag
cttcgttacttatgcaaaatgaagtaa
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