Macrobrachium rosenbergii (giant freshwater prawn): 136839230
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Entry
136839230 CDS
T10429
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
mrj Macrobrachium rosenbergii (giant freshwater prawn)
Pathway
mrj04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
mrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
136839230
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mrj00536
]
136839230
Glycosaminoglycan binding proteins [BR:
mrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136839230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
New_glue
Motif
Other DBs
NCBI-GeneID:
136839230
NCBI-ProteinID:
XP_066961076
LinkDB
All DBs
Position
6:16662045..16693509
Genome browser
AA seq
1567 aa
AA seq
DB search
MWRLHDPAGRPPLVAALAFLFLLLVARAAYAEPEPEAKPQEYDEYYDYEYGEYPYEGGEY
TYNGAGGEEDYQPAEGEGEDAEEEEEEEPYYPPYDPYATEAPPYDPYATEAPPYDPYGTP
APDYDPYDPYGIPYDPYDRPAPTTTTTTTTTPPPTTTTTTTTTTTTTTTPPPPTTTRPRR
RGNKNREGGRRRQPEEEQPQPPPPEIVGPAPDYASSTTGESGVPGPPGDRGPSGSPGTPG
IPGDPGPPGPMPDISPWLSQLSQSQGGEKGPQPDPFSYLQAQVGPVGPRGPVGSPGPPGP
QGFQGMRGEPGDPGPGGPGGPPGPRGLPGIPGKDGENGDDGAPGPQGSVGPPGPRGLPGM
PGLPGVKGHRGFPGLDGAKGEQGTSGDKGAAGPGGPPGPIGPMGSAGPRGERGREGPPGP
PGLRGIDGIAGPPGPPGGPGKPGPPGFPGSAGAKGDQGVQGPKGSQGLQGPRGEAGKPGV
PGEAGSQGPPGKDGLVGEKGAPGAQGDAGPPGFPGARGPPGLPGSPGTPGVKGEAGLQGE
RGFKGELGMKGELGTPGPRGLPGAPGSPGKRGKRGMRGPPGGAGPQGERGPPGGRGLPGA
DGPPGPKGQSGDAGPVGAAGQKGREGNPGPPGLPGRQGLRGPTGLSGPAGKTGRPGDRGP
PGADGKAGDQGPQGIQGLPGPMGPPGPRGQIGEPGKDGSVGETGPTGPRGDPGKDGAQGT
IGSPGPQGASGERGPPGPPGARGFQGLPGSPGATGSAGKDGEAGLQGPRGLPGTAGLRGS
RGFPGERGAQGPPGENGARGEPGLPGPDGPSGPAGPAGQKGHAGPSGLVGLPGGRGAPGL
PGEKGERGGAGPVGPEGPPGRQGDQGPQGVMGPPGPQGEPAEKGDPGPPGPPGEPGANGM
MGERGPQGQQGIQGFPGPIGPPGAAGPKGQRGLPGQKGAQGNTGLVGQPGEAGPQGLAGL
PGAKGQRGEQGTRGEPGLMGPPGRPGNPGTPGNNGEAGQPGAEGQPGIKGAPGDTGRPGL
PGPSGQPGAPGVEGPKGEAGPMGRSGPVGQPGPIGASGERGLPGLPGPPGPTGLSGKTGE
RGEPGMEGKRGAEGPVGPPGLAGPVGPIGPTGDTGSPGADGKPGPPGIGGRTGDKGPPGP
PGSQGSPGPAGLPGPPGPAGPIGPTGERGDRGEVGPQGVEGSPGPRGKPGSPGMQGEKGE
TGAAGPKGAKGHRGLIGLQGLPGPQGPPGEKGVPGVAGPPGPSGEPGTKGPPGRDGGIGL
QGIMGPPGPRGPSGEEGGVGPSGPPGPPGPPGPPGESMGYDAAALAVLLGQGQSKGPDPI
QGDDSELPARLFGKEITDDERRDLITKAYEQLKTSFKKFLKPEGTKDAPAKTCKDLAYAH
PELPSGEYWIDPNEGDTKDAIVVYCDMEEKATCVLPQPAMTEEFNYVTSDKGAKWLGEDI
SPGFEFTYKADSNQMSFLQLLSASASQELTYHCKNSIAVFDAQKRSFRNALKIMTATDHE
LKARGSNKFRYRVLEDGCKTASDAWSFTKIAYRTDKPQRLPFTDIGLQDVGSPNQSFKIE
IGPVCFS
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgtggcggctacacgaccccgcagggcggccgcccttggtcgccgcccttgcgttcctc
ttcctcctcttggtcgctcgcgccgcctacgccgagcctgaacccgaagctaagcctcaa
gaatacgacgaatactatgattatgagtatggagagtatccatacgaaggaggagagtac
acctacaacggcgccggcggtgaggaagactaccaacctgcagaaggcgaaggagaggac
gccgaagaagaagaagaagaagagccctattaccctccctacgacccctacgccacagag
gcccccccgtacgacccctacgccacggaggcgcccccctacgacccctacggcactccc
gccccagattacgatccgtatgacccgtacggcatcccctacgatccttacgatcgcccc
gcccccaccaccactaccaccactactactacccctccccccactaccacaactaccacc
actaccaccaccacaacaactaccactccccctccgccaaccacaacccggccgaggagg
agggggaataaaaatagggaaggaggacgacgaaggcagcccgaggaagagcaacctcaa
ccaccacccccggaaatcgttggcccagccccagattatgcttcctctacaactggtgaa
tctggagtacctggaccccctggtgaccgtggcccgtcaggcagtcctggtacgccaggt
attcctggagatcctggtccacctggtcccatgcctgatatttctccatggttgtctcag
ctgtctcagtcccagggaggcgagaagggcccacagcctgatcctttcagctatctacaa
gcccaagttggtccagttggtcccagaggcccagtagggtcacctggaccccctggcccc
cagggtttccaaggaatgcgtggtgagcctggtgatcctggacctggtggccccggaggg
ccccctggaccaagaggtctccctggaatacccggcaaagatggagagaatggtgacgat
ggtgcccctggacctcaaggaagtgttggacccccaggaccccgtggtttacccggaatg
cccggtctcccgggtgtgaaaggtcaccgtggtttcccaggcttggatggcgcaaaagga
gaacaaggtacatctggtgataagggtgctgctggacccggtggacccccaggacctatt
ggaccgatgggatctgctggcccccgaggtgaaagaggaagagaaggtccacctggtcct
cctggtctgaggggaattgatggaattgctgggccaccaggtccccctggaggtcccggt
aagcctggacctcccggattcccaggaagcgctggtgccaaaggagaccaaggtgtacag
ggacccaaaggttctcaaggtctccagggcccaagaggtgaggcaggtaaacctggtgtc
ccaggagaggctggttctcaaggacccccaggaaaagatggtttagttggtgaaaaaggt
gccccaggagctcaaggagatgctggtccacctggcttccctggtgctcgagggcctcct
gggttgcctggtagccctggtacacctggcgtcaaaggagaggcgggtctacaaggagag
agaggtttcaagggagaacttggtatgaagggtgaacttggaactccaggtccccgtggt
cttccaggagctccaggttctcctggtaaacgtggtaagagaggcatgcgtggaccccca
ggaggtgcaggccctcagggtgaacgtggaccccctggtggacgaggtcttcctggtgct
gatggccctcctggacctaaaggtcagtctggtgatgctgggcctgttggtgcagctggt
caaaaaggacgtgaaggaaacccaggtccacctggattaccaggcagacagggcttgagg
ggtccaacaggtctttcagggcctgctggtaaaacaggtcgccctggagatcgtggaccc
cctggtgcagatggaaaggctggagaccaaggaccccaaggtatccaagggttgcctggt
ccaatgggacctcctggaccacgtggacaaattggagaacccggcaaagatggcagcgtt
ggtgaaacaggtccaactggtcctcgtggagaccctggaaaggatggtgcccaaggcaca
ataggttcacctggtcctcaaggagcttctggcgaacgtggaccaccagggcctcctggt
gctcgtggattccaagggttgcctggctctccaggagccacgggatcagctggtaaagat
ggtgaagcaggcttacaaggtccccgaggattaccaggtactgcaggactccgaggatca
agaggtttcccaggagaaagaggtgctcaaggtcccccaggagaaaatggtgctcgagga
gaaccaggcttgcctggccctgatggaccttctggtcccgctggcccagctggtcaaaaa
ggtcatgctggtccctcaggtcttgttggccttcctggtggtcgaggcgcacctggtctt
cctggagaaaaaggtgaacgtggtggagctggccctgttggacctgaaggtcctcctggt
cgtcaaggtgatcaagggcctcaaggtgtaatgggtccaccaggtccccaaggagaacct
gcagaaaaaggagatccaggcccacctggacctcctggtgagcctggagcaaatggcatg
atgggagaacgtggaccacaaggacaacaaggtattcagggcttccctggaccaattgga
cctcctggggcagctgggccaaaaggtcaacgtggtcttcctggtcaaaaaggagcacaa
ggaaatactgggcttgttggacaacctggcgaagctggtccacagggtctagcaggtctt
ccaggcgccaaaggacaacgaggtgaacaaggaactcgaggagaaccaggcctaatgggc
cctcctggaaggcctggtaacccaggtacccctggcaataatggtgaagctggtcaacct
ggtgctgaaggtcaacctggaatcaaaggtgcccctggtgatactggacgacctggatta
cctggtccaagtggacaacctggagcacctggagtggaaggtccaaaaggtgaagctgga
ccaatgggacgttctggaccagtaggtcagcctggacccatcggagcttcaggagaacga
ggactacctgggttacctggtcccccaggtcctacaggcttatctggaaagacaggtgaa
cgtggagagcccggtatggaaggcaagcggggtgcagaaggtccagtgggtcccccaggc
ttagctggaccagttggtcctattggtcctactggtgacactggctccccaggtgctgat
ggtaaacctggtccacctggtattggtggtcgaactggagacaagggaccaccaggtcct
ccaggttctcaaggatcaccagggcctgccggtcttcctggaccaccaggtcctgctggc
cccattggtcccactggagaacgaggtgaccgtggtgaagtaggtccacagggagtagag
ggttcacctggacctcgtggcaagcctggttcacctggcatgcaaggagaaaagggagag
actggggctgctggtccaaaaggtgccaaaggtcatcgaggtctcattggtcttcaaggt
cttcctggtccccagggtccacctggtgaaaagggtgtacctggagttgctggtccccct
ggtccatctggagagcctggcactaaaggtccccctggtcgtgatggaggtattggtttg
caaggtattatgggtcctccaggtcctcgtggtccaagtggtgaagagggcggggttggt
ccatcaggtccacctggtcctcctggtcccccaggtccacctggtgagtccatgggctat
gatgcagccgcactcgcagttctgcttggccaaggccaatcgaagggtccagatcccatc
cagggagatgattccgaactacctgctcgcctctttggaaaggagattacagatgacgag
cgaagagacctgatcaccaaagcttacgagcaactcaagacatctttcaaaaagttcctc
aagccagaaggcaccaaggatgccccagcaaagacctgcaaagatcttgcttacgctcat
ccagagctgcctagtggcgaatactggattgatcctaatgaaggcgacacaaaggatgcc
atcgtagtttactgcgacatggaagagaaagccacctgcgtcctacctcagcctgctatg
accgaagagttcaactacgtcactagcgacaaaggtgctaaatggctcggcgaagacatc
agtccaggtttcgagttcacgtacaaagctgacagcaaccagatgtccttcctgcagttg
ctctctgcatctgcctcccaagagctgacctaccattgcaagaattccattgctgtcttc
gacgcccagaagaggagcttcaggaatgctctcaagatcatgactgccaccgatcatgag
ctgaaggccagaggaagtaacaagttcagatacagagtcttggaggacggctgtaagacg
gcatccgacgcctggtcgttcacgaagatcgcgtaccgcaccgacaagcctcaacggtta
ccgttcaccgacatcggactccaagacgtcggttctccgaaccagtcgttcaagatcgag
attggtccggtgtgtttctcatag
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integrated database retrieval system
